BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0660600 Os04g0660600|AK120899
         (69 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55290.1  | chr5:22423037-22424086 REVERSE LENGTH=71           107   2e-24
AT4G26710.1  | chr4:13468705-13469668 FORWARD LENGTH=71            98   8e-22

>AT5G55290.1 | chr5:22423037-22424086 REVERSE LENGTH=71
          Length = 70

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/67 (76%), Positives = 58/67 (86%)

Query: 1  MGFWVTTLIFLLAGFVASLFSLLCCNRGPSTNLFHLTLVITATVCCWMMWAIVYLAQLKP 60
          MGF +TTLIF++ G +ASL   +CCNRGPSTNL HLTLVITATVCCWMMWAIVY+AQ+ P
Sbjct: 1  MGFLITTLIFVVVGIIASLCVRICCNRGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNP 60

Query: 61 LINPILS 67
          LI PILS
Sbjct: 61 LIVPILS 67



>AT4G26710.1 | chr4:13468705-13469668 FORWARD LENGTH=71
          Length = 70

 Score = 98.2 bits (243), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 47/67 (70%), Positives = 56/67 (83%)

Query: 1  MGFWVTTLIFLLAGFVASLFSLLCCNRGPSTNLFHLTLVITATVCCWMMWAIVYLAQLKP 60
          M F VT+LIF + G +AS+ + +C N+GPSTNL HLTLVITATVCCWMMWAIVY+AQ+ P
Sbjct: 1  MAFVVTSLIFAVVGIIASICTRICFNKGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNP 60

Query: 61 LINPILS 67
          LI PILS
Sbjct: 61 LIVPILS 67



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.334    0.143    0.500 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,468,196
Number of extensions: 43610
Number of successful extensions: 183
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 2
Length of query: 69
Length of database: 11,106,569
Length adjustment: 41
Effective length of query: 28
Effective length of database: 9,982,513
Effective search space: 279510364
Effective search space used: 279510364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 104 (44.7 bits)