BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0653300 Os04g0653300|Os04g0653300
         (169 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57420.1  | chr5:23270024-23270959 FORWARD LENGTH=172           95   2e-20

>AT5G57420.1 | chr5:23270024-23270959 FORWARD LENGTH=172
          Length = 171

 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 57/87 (65%), Gaps = 17/87 (19%)

Query: 61  LDGRSICHRVHLSKHTGYRSLAAALRRMFXXXXXXXXXXXXXXXRSSCSDADRGGLDLSN 120
           L+GRSIC R+ L KH  Y+SLA+ALR+MF                 S  D     LDLSN
Sbjct: 79  LEGRSICQRISLDKHGSYQSLASALRQMFVDGA------------DSTDD-----LDLSN 121

Query: 121 AVPGHVVAYEDIENDLLLAGDLNWKDF 147
           A+PGH++AYED+ENDLLLAGDL WKDF
Sbjct: 122 AIPGHLIAYEDMENDLLLAGDLTWKDF 148



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,615,475
Number of extensions: 68668
Number of successful extensions: 303
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 78
Effective length of database: 8,611,713
Effective search space: 671713614
Effective search space used: 671713614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)