BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0653000 Os04g0653000|AK059441
(194 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G20900.1 | chr5:7090883-7092201 FORWARD LENGTH=188 95 3e-20
AT3G43440.1 | chr3:15367670-15369774 FORWARD LENGTH=239 73 1e-13
AT1G74950.1 | chr1:28148919-28150258 REVERSE LENGTH=250 64 5e-11
AT5G13220.1 | chr5:4219001-4220502 FORWARD LENGTH=198 54 6e-08
AT1G19180.1 | chr1:6622312-6623271 FORWARD LENGTH=254 52 2e-07
>AT5G20900.1 | chr5:7090883-7092201 FORWARD LENGTH=188
Length = 187
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 71/130 (54%), Gaps = 23/130 (17%)
Query: 49 PSQLTIFYGGSVCVYDSVPPEKXXXXXXXXXXXXXXXXXXXXXXXXXVKPPVMPAANATQ 108
P+QLTIF+GGSV V+D +P EK + M N+T
Sbjct: 55 PNQLTIFFGGSVTVFDGLPSEKVQEILR-------------------IAAKAMETKNSTS 95
Query: 109 AA--VSPVLTRSLSLQSTS-VATGQPQ-VAADPSSICKLQADLPIARRHSLQRFLEKRRD 164
+ SP L R+ S STS VA+ Q P S C+ ADLPIARRHSLQRFLEKRRD
Sbjct: 96 ISPVSSPALNRAPSFSSTSNVASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRD 155
Query: 165 RLVSKAPYPT 174
RLV+K PYPT
Sbjct: 156 RLVNKNPYPT 165
>AT3G43440.1 | chr3:15367670-15369774 FORWARD LENGTH=239
Length = 238
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 59/135 (43%), Gaps = 39/135 (28%)
Query: 49 PSQLTIFYGGSVCVYDSVPPEKXXXXXXXXXXXXXXXXXXXXXXXXXVKPPVMPAANATQ 108
PSQLTI +GGS V+D +P EK + AA AT+
Sbjct: 129 PSQLTIIFGGSFSVFDGIPAEKVQEILH-----------------------IAAAAKATE 165
Query: 109 A----AVSPVLTRSLSLQSTSVATGQPQVAADPSSICKLQADLPIARRHSLQRFLEKRRD 164
+++P L R++S + S C AD+PIARR SLQRF EKRR
Sbjct: 166 TINLTSINPALKRAISFSNASTVA------------CVSTADVPIARRRSLQRFFEKRRH 213
Query: 165 RLVSKAPYPTKSSEG 179
R V PY +SE
Sbjct: 214 RFVHTKPYSATTSEA 228
>AT1G74950.1 | chr1:28148919-28150258 REVERSE LENGTH=250
Length = 249
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 56/137 (40%), Gaps = 44/137 (32%)
Query: 52 LTIFYGGSVCVYDSVPPEKXXXXXXXXXXXXXXXXXXXXXXXXXVKPPVMPAANATQAAV 111
LTIFYGG V V+D EK V+ AN A
Sbjct: 120 LTIFYGGRVMVFDDFSAEKAKE--------------------------VIDLANKGSAKS 153
Query: 112 SPVLTRSLSLQSTSVATGQPQVAADPSSICK----------------LQADLPIARRHSL 155
T + + A Q ++A+ P+ +C L +LPIARR SL
Sbjct: 154 FTCFT--AEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEPIQPNPASLACELPIARRASL 211
Query: 156 QRFLEKRRDRLVSKAPY 172
RFLEKR+DR+ SKAPY
Sbjct: 212 HRFLEKRKDRITSKAPY 228
>AT5G13220.1 | chr5:4219001-4220502 FORWARD LENGTH=198
Length = 197
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 27/30 (90%)
Query: 143 LQADLPIARRHSLQRFLEKRRDRLVSKAPY 172
L+ DLPIARR SLQRFLEKR++RLVS +PY
Sbjct: 163 LEGDLPIARRKSLQRFLEKRKERLVSTSPY 192
>AT1G19180.1 | chr1:6622312-6623271 FORWARD LENGTH=254
Length = 253
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 58/137 (42%), Gaps = 25/137 (18%)
Query: 52 LTIFYGGSVCVYDSVPPEKXXXXXXXXXXXXXXXXXXXXXXXXXVKPPVMPAANATQAAV 111
LTIFY G V V++ EK A N T
Sbjct: 127 LTIFYAGQVIVFNDFSAEKAKEVINLASKGTANSL----------------AKNQTDIR- 169
Query: 112 SPVLTRSLSLQSTSVATGQPQVAADPSSICKLQADLPIARRHSLQRFLEKRRDRLVSKAP 171
S + T + + T Q + + P+ + +LPIARR SL RFLEKR+DR+ SKAP
Sbjct: 170 SNIATIANQVPHPRKTTTQEPIQSSPTPL----TELPIARRASLHRFLEKRKDRVTSKAP 225
Query: 172 Y----PTKSSEGMEASG 184
Y P K+S + +G
Sbjct: 226 YQLCDPAKASSNPQTTG 242
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.128 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,203,969
Number of extensions: 109594
Number of successful extensions: 308
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 5
Length of query: 194
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 101
Effective length of database: 8,556,881
Effective search space: 864244981
Effective search space used: 864244981
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)