BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0652600 Os04g0652600|AK107489
         (548 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28120.1  | chr1:9813219-9815143 REVERSE LENGTH=307             89   4e-18

>AT1G28120.1 | chr1:9813219-9815143 REVERSE LENGTH=307
          Length = 306

 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 112/218 (51%), Gaps = 9/218 (4%)

Query: 236 DKKPIVDLADEFENNT--IKKKITLLSEKYDFFRPVDRDGSCFYRAFIFSYMERIVAMQD 293
           DK+P+  LA E+++ +  + +KI +L  +Y   R    DG+CF+R+F+FSY+E I+  QD
Sbjct: 51  DKEPLSSLAAEYQSGSPILLEKIKILDSQYIGIRRTRGDGNCFFRSFMFSYLEHILESQD 110

Query: 294 DLERIIEVSRIGERIGKYKQAYARFGSFGIPQEEFLKA-LSAFEQLINLIEKGVAVEQLY 352
             E    V RI   + K ++     G      E+F    L   + ++   E+ ++ ++L 
Sbjct: 111 RAE----VDRIKVNVEKCRKTLQNLGYTDFTFEDFFALFLEQLDDILQGTEESISYDELV 166

Query: 353 QID-ETDITKNSLRFLRFLTEIEICTHEDHYKGFLLTADYSSVFEFCQVEVRPENAEASN 411
               +  ++   + F RF+T  +I T  D ++ F+     ++V +FC+  V P   E+ +
Sbjct: 167 NRSRDQSVSDYIVMFFRFVTAGDIRTRADFFEPFITGLSNATVDQFCKSSVEPMGEESDH 226

Query: 412 EQMKALVEALGIPVLVENLDTTS-ETDTPILNQHFIYP 448
             + AL +ALG+ + V  LD +S ++    +N H   P
Sbjct: 227 IHITALSDALGVAIRVVYLDRSSCDSGGVTVNHHDFVP 264



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,665,778
Number of extensions: 441048
Number of successful extensions: 1164
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1163
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 445
Effective length of database: 8,282,721
Effective search space: 3685810845
Effective search space used: 3685810845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 114 (48.5 bits)