BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0645500 Os04g0645500|AK062761
(248 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G73320.1 | chr1:27565728-27567206 REVERSE LENGTH=317 59 3e-09
AT5G49560.1 | chr5:20110961-20111785 REVERSE LENGTH=275 54 8e-08
AT3G50850.1 | chr3:18901389-18902144 REVERSE LENGTH=252 54 1e-07
AT1G08125.2 | chr1:2539748-2542132 REVERSE LENGTH=323 50 8e-07
AT1G63855.3 | chr1:23699557-23700954 REVERSE LENGTH=197 48 4e-06
>AT1G73320.1 | chr1:27565728-27567206 REVERSE LENGTH=317
Length = 316
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 63/128 (49%), Gaps = 10/128 (7%)
Query: 41 ALTGSWLWDSSLVLASHLASCVHHH--HLRGATVLELGAGTGLPGIAAVACLGAARCVLT 98
+TGS +WDS +VL L V L G ++ELG+G GL G +A L VLT
Sbjct: 116 GVTGSVMWDSGVVLGKFLEHSVDSKVLSLEGKKIVELGSGCGLVG--CIAALLGGNAVLT 173
Query: 99 DVRPLLPGLRANADAN---GLTAEQADVRELRWGGHLEPEVQV---DVVLMSDVFYDPDD 152
D+ L L+ N N G T A V+EL WG +P++ D VL SDV Y +
Sbjct: 174 DLPDRLRLLKKNIQTNLHRGNTRGSAIVQELVWGDDPDPDLIEPFPDYVLGSDVIYSEEA 233
Query: 153 MPAMADTL 160
+ + TL
Sbjct: 234 VHHLVKTL 241
>AT5G49560.1 | chr5:20110961-20111785 REVERSE LENGTH=275
Length = 274
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 71 TVLELGAGTGLPGIAAVACLGAARCVLTDVRPLLPGLRANADANGLTAE----QADVREL 126
+LELG+GTGL GIAA L +A +TD+ +L L NA+AN E + +V L
Sbjct: 108 NILELGSGTGLVGIAAAITL-SANVTVTDLPHVLDNLNFNAEANAEIVERFGGKVNVAPL 166
Query: 127 RWGGHLEPEV---QVDVVLMSDVFY 148
RWG + EV VD++L SDV Y
Sbjct: 167 RWGEADDVEVLGQNVDLILASDVVY 191
>AT3G50850.1 | chr3:18901389-18902144 REVERSE LENGTH=252
Length = 251
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 71 TVLELGAGTGLPGIAAVACLGAARCVLTDVRPLLPGLRANADANGLTAE----QADVREL 126
++ELG+GTG+ GIAA A LG A +TD+ ++ L+ NADAN + V L
Sbjct: 91 NIVELGSGTGIVGIAAAATLG-ANVTVTDLPNVIENLKFNADANAQVVAKFGGKVHVASL 149
Query: 127 RWGGHLEPEV---QVDVVLMSDVFY 148
RWG + E VD++L SDV Y
Sbjct: 150 RWGEIDDVESLGQNVDLILASDVVY 174
>AT1G08125.2 | chr1:2539748-2542132 REVERSE LENGTH=323
Length = 322
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 25/154 (16%)
Query: 29 ERDGTHDPATGRALTGSWLWDSSLVLASHLASC-----VHHHHLRGATVLELGAGTGLPG 83
E D DP + G+ +WD+S+V A +L L+G +ELGAG G+ G
Sbjct: 29 ELDFAQDPNSKHL--GTTVWDASMVFAKYLGKNSRKGRFSSSKLKGKRAIELGAGCGVAG 86
Query: 84 IAAVACLGAARCVLTDVRPLLPGLRANADANGLTAEQAD---------VRELRWGGH--- 131
A+A LG V TD + +LP L+ N + N Q + V EL WG
Sbjct: 87 F-ALAMLGCD-VVTTDQKEVLPLLKRNVEWNTSRIVQMNPGSAFGSLRVAELDWGNEDHI 144
Query: 132 --LEPEVQVDVVLMSDVFYDPDDMPAMADTLHGL 163
+EP D V+ +DV Y + + T+ L
Sbjct: 145 TAVEP--PFDYVIGTDVVYSEQLLEPLLRTILAL 176
>AT1G63855.3 | chr1:23699557-23700954 REVERSE LENGTH=197
Length = 196
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 12/111 (10%)
Query: 44 GSWLWDSSLVLASHLASCVHHHHLRGATVLELGAGTGLPGIAAVACLGAARCVLTD--VR 101
G ++W S++LA ++ H R +++LELGAGT LPG+ A A LTD +
Sbjct: 35 GLFVWPCSVILAEYVWQ--HRSRFRDSSILELGAGTSLPGLVAAKV--GANVTLTDDATK 90
Query: 102 P-LLPGLRANADANGLTAEQADVRELRWGGHLEP--EVQVDVVLMSDVFYD 149
P +L +R + N L +V L WG P +++ +++L +DV YD
Sbjct: 91 PEVLDNMRRVCELNKLN---CNVLGLTWGVWDAPILDLRPNIILGADVLYD 138
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.134 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,006,818
Number of extensions: 188174
Number of successful extensions: 456
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 5
Length of query: 248
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 152
Effective length of database: 8,474,633
Effective search space: 1288144216
Effective search space used: 1288144216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)