BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0644600 Os04g0644600|AK105846
         (392 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G52510.1  | chr1:19563039-19565260 REVERSE LENGTH=381          554   e-158
AT4G12830.1  | chr4:7531189-7533327 FORWARD LENGTH=394            149   3e-36

>AT1G52510.1 | chr1:19563039-19565260 REVERSE LENGTH=381
          Length = 380

 Score =  554 bits (1428), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 257/344 (74%), Positives = 297/344 (86%)

Query: 49  LVVAASGSKDETAEGKKQEEESEFNPFGFVTDNPSSRGAIQLPESPAQDGNVGQMLYRIE 108
           ++ A S + +       ++E+  FNPFGFVTDNPSSR AIQLPESPA+DGNVGQMLYR E
Sbjct: 37  VINATSENGNSGGSKNDRDEDPSFNPFGFVTDNPSSRSAIQLPESPAEDGNVGQMLYRTE 96

Query: 109 DKGREFGSRVKSGKLRWFVRETGSAGARRGTVVFIHGAPSQSFSYRMVMSQMADAGYHCF 168
           DKG+E+GS +KSGKLRWFVRETGS  +RRGT+VF+HGAP+QSFSYR VMS+++DAG+HCF
Sbjct: 97  DKGKEYGSTIKSGKLRWFVRETGSKESRRGTIVFVHGAPTQSFSYRTVMSELSDAGFHCF 156

Query: 169 APDWIGFGFSDMPQPGYGFDYTEEEFHKSLDELLSTLNITEPFFLVVQGFLVGSYGLTWA 228
           APDWIGFGFSD PQPGYGF+YTE+E+H++ D+LL  L +  PFFLVVQGFLVGSYGLTWA
Sbjct: 157 APDWIGFGFSDKPQPGYGFNYTEKEYHEAFDKLLEVLEVKSPFFLVVQGFLVGSYGLTWA 216

Query: 229 LKNSSKVLKVAILNSPLTVSSPVPGLFNQLRLPLFGEFTCQNAVLAERFIEAGSPYVLKS 288
           LKN SKV K+AILNSPLTVSSPVPGLF QLR+PLFGEFTCQNA+LAERFIE GSPYVLK+
Sbjct: 217 LKNPSKVEKLAILNSPLTVSSPVPGLFKQLRIPLFGEFTCQNAILAERFIEGGSPYVLKN 276

Query: 289 EKADVYRLPYLSSGAPGFALLEAARKANFRDVLSRISAGFASNSWEKPILLAWGISDKYL 348
           EKADVYRLPYLSSG PGFALLE A+K NF D LS+I+ GF+S SW+KP LLAWGI+DKYL
Sbjct: 277 EKADVYRLPYLSSGGPGFALLETAKKINFGDTLSQIANGFSSGSWDKPTLLAWGIADKYL 336

Query: 349 PLPIAEEFQKGNPAAIKLEPIEGAGHMPQEDWPEKVVTALRSFL 392
           P  IAEEF+K NP  +KL  IEGAGH+PQEDWPEKVV ALR+F 
Sbjct: 337 PQSIAEEFEKQNPQNVKLRLIEGAGHLPQEDWPEKVVAALRAFF 380



>AT4G12830.1 | chr4:7531189-7533327 FORWARD LENGTH=394
          Length = 393

 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/266 (35%), Positives = 140/266 (52%), Gaps = 11/266 (4%)

Query: 123 LRWFVRETGSAGARRGTVVFIHGAPSQSFSYRMVMSQMADAGYHCFAPDWIGFGFSDMPQ 182
            RWF  E+GS  +    V+ IHG PSQ++SYR  +  ++   Y   A DW+GFGFSD PQ
Sbjct: 121 FRWFSVESGSVDS--PPVILIHGFPSQAYSYRKTIPVLS-KNYRAIAFDWLGFGFSDKPQ 177

Query: 183 PGYGFDYTEEEFHKSLDELLSTLNITEPFFLVVQGFLVGSYGLTWALKNSSKVLKVAILN 242
            GYGF+YT +EF  SL+  +  +  T    LVVQG+   +  + +A     K+  + +LN
Sbjct: 178 AGYGFNYTMDEFVSSLESFIDEVT-TSKVSLVVQGYFSAAV-VKYARNRPDKIKNLILLN 235

Query: 243 SPLT-VSSPVPGLFNQLRLPLFGEFTCQNAVLA-ERFIEAGSPYVLKSEKADVYRLPYLS 300
            PLT   + +P   +     L GE   Q+ + A ++ + +  PY +K + A VYR PYL+
Sbjct: 236 PPLTPEHAKLPSTLSVFSNFLLGEIFSQDPLRASDKPLTSCGPYKMKEDDAMVYRRPYLT 295

Query: 301 SGAPGFALLEAAR--KANFRDVLSRISAGFASNSWEKPILLAWGISDKYLPLPIAEEFQK 358
           SG+ GFAL   +R  K   +     +       +W+ PI + WG  D++L     EEF K
Sbjct: 296 SGSSGFALNAISRSMKKELKKYAEEMRTSLMDKNWKIPITVCWGQRDRWLSYEGVEEFCK 355

Query: 359 GNPAAIKLEPIEGAGHMPQEDWPEKV 384
              +   L  +  AGH  QED  E++
Sbjct: 356 S--SGHNLVELPNAGHHVQEDCGEEL 379



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,962,565
Number of extensions: 351246
Number of successful extensions: 900
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 2
Length of query: 392
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 291
Effective length of database: 8,337,553
Effective search space: 2426227923
Effective search space used: 2426227923
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)