BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0643300 Os04g0643300|AK120067
         (408 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G62640.1  | chr1:23192502-23194737 FORWARD LENGTH=405          479   e-135

>AT1G62640.1 | chr1:23192502-23194737 FORWARD LENGTH=405
          Length = 404

 Score =  479 bits (1232), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/364 (65%), Positives = 294/364 (80%), Gaps = 5/364 (1%)

Query: 49  RCCASTVDDGVVSAAAAP-KPRLPRVVGMGSKLIGCGSATPSLSVSNDDLSKIVETSDEW 107
           R   S+V      A+++P + + PR+V  G KLIGCGSA PSL +SNDDL+KIV+T+DEW
Sbjct: 40  RVLCSSVSSVDKDASSSPSQYQRPRLVPSGCKLIGCGSAVPSLLISNDDLAKIVDTNDEW 99

Query: 108 IAARTGIRNRRVLSGNETLRELSVQAAKKALEMAQVNADDVDLVLLCTSTPDDLFGGAAQ 167
           IA RTGIRNRRV+SG ++L  L+V+AA KALEMA+V  +D+DLVL+CTSTPDDLFG A Q
Sbjct: 100 IATRTGIRNRRVVSGKDSLVGLAVEAATKALEMAEVVPEDIDLVLMCTSTPDDLFGAAPQ 159

Query: 168 VLAEVGCA-NAFGFDITAACSGFIIGLITATRFIKGGGIRNILVIGADALSQFVDWTDRG 226
           +   +GC  N   +DITAACSGF++GL++A   I+GGG +N+LVIGAD+LS+FVDWTDRG
Sbjct: 160 IQKALGCTKNPLAYDITAACSGFVLGLVSAACHIRGGGFKNVLVIGADSLSRFVDWTDRG 219

Query: 227 TCILFGDAAGAVLVQACSADEDGLLGFCVQSDGNGQKHLNC-VSSHVESILSKTNG--VP 283
           TCILFGDAAGAV+VQAC  ++DGL  F V SDG+G++HLN  V        S +NG    
Sbjct: 220 TCILFGDAAGAVVVQACDIEDDGLFSFDVHSDGDGRRHLNASVKESQNDGESSSNGSVFG 279

Query: 284 SFPPKKATFSNIEMNGKEVFRFAVRCVPQSIEKALEEAGLPASSIDWLLLHQANQRIIDA 343
            FPPK++++S I+MNGKEVFRFAV+CVPQSIE AL++AGLPAS+IDWLLLHQANQRIID+
Sbjct: 280 DFPPKQSSYSCIQMNGKEVFRFAVKCVPQSIESALQKAGLPASAIDWLLLHQANQRIIDS 339

Query: 344 AASRLDIPSDKVISNLANYGNTSAASIPLALDEAVRAGKVKAGDVIAASGFGAGLTWGSA 403
            A+RL  P ++VISNLANYGNTSAASIPLALDEAVR+GKVK G  IA SGFGAGLTWGSA
Sbjct: 340 VATRLHFPPERVISNLANYGNTSAASIPLALDEAVRSGKVKPGHTIATSGFGAGLTWGSA 399

Query: 404 IVKW 407
           I++W
Sbjct: 400 IMRW 403



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,171,288
Number of extensions: 329167
Number of successful extensions: 948
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 948
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 307
Effective length of database: 8,337,553
Effective search space: 2559628771
Effective search space used: 2559628771
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)