BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0643100 Os04g0643100|AK067501
         (269 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G58730.1  | chr3:21718495-21719280 REVERSE LENGTH=262          416   e-117

>AT3G58730.1 | chr3:21718495-21719280 REVERSE LENGTH=262
          Length = 261

 Score =  416 bits (1068), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/269 (75%), Positives = 230/269 (85%), Gaps = 8/269 (2%)

Query: 1   MSGQTQRLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRAILKKIVAAKESMG 60
           M+GQ  RLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRA+LKKIV AKESMG
Sbjct: 1   MAGQNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMG 60

Query: 61  EAMRASSFSLAEAKYVAGDGVRHVVLQSVRSASLRVRSHQENVAGVKLPKFTHFVDXXXX 120
           + M+ SSF+L E KYVAGD V+HVVL++V+ A+L+VRS  EN+AGVKLPKF HF +    
Sbjct: 61  DMMKTSSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETK 120

Query: 121 XXXXXXXXXXLTGLARGGQQVAACRAAHVKAIEVLVELASLQTSFLTLDEAIKTTNRRVN 180
                     LTGLARGGQQV ACR A+VKAIEVLVELASLQTSFLTLDEAIKTTNRRVN
Sbjct: 121 ND--------LTGLARGGQQVRACRVAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVN 172

Query: 181 ALENVVKPRLENTISYIKGELDELEREDFFRLKKIQGYKKREIERQMAAAKQFAEEQLAE 240
           ALENVVKP+LENTISYIKGELDELEREDFFRLKKIQGYK+RE+ERQ A AK+FAEE + E
Sbjct: 173 ALENVVKPKLENTISYIKGELDELEREDFFRLKKIQGYKRREVERQAANAKEFAEEMVLE 232

Query: 241 EVALKRGISVGAATNMLVAGGERDEDIIF 269
           +++++RGIS+ AA N LV G E+D DIIF
Sbjct: 233 DISMQRGISINAARNFLVGGAEKDSDIIF 261



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.131    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,327,771
Number of extensions: 144413
Number of successful extensions: 572
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 571
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 172
Effective length of database: 8,447,217
Effective search space: 1452921324
Effective search space used: 1452921324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)