BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0642100 Os04g0642100|J043006J10
(135 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G67270.1 | chr5:26840248-26841984 REVERSE LENGTH=330 220 2e-58
AT3G47690.1 | chr3:17581353-17583346 FORWARD LENGTH=277 219 2e-58
AT5G62500.1 | chr5:25092929-25095006 FORWARD LENGTH=294 212 5e-56
>AT5G67270.1 | chr5:26840248-26841984 REVERSE LENGTH=330
Length = 329
Score = 220 bits (560), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 97/119 (81%), Positives = 112/119 (94%)
Query: 10 IGMMDSAYFVGRGEILSWINATLQLSLAKVEEAASGAVQCQLMDMVHPGVVPMHKVNFDA 69
IGMMDSAYFVGR EIL+WIN+TLQL+L+KVEEA SGAV CQLMD VHPG VPMHKVNFDA
Sbjct: 5 IGMMDSAYFVGRSEILAWINSTLQLNLSKVEEACSGAVHCQLMDSVHPGTVPMHKVNFDA 64
Query: 70 KTEYDMIQNYKILQDVFNKLRLSKNIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMN 128
K+EY+MIQNYK+LQDVFNKL+++K+IEV+KLVKGRPLDNLEF+QW+K+YCDSVNGG N
Sbjct: 65 KSEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKKYCDSVNGGQHN 123
>AT3G47690.1 | chr3:17581353-17583346 FORWARD LENGTH=277
Length = 276
Score = 219 bits (559), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 99/125 (79%), Positives = 114/125 (91%), Gaps = 1/125 (0%)
Query: 9 TIGMMDSAYFVGRGEILSWINATLQLSLAKVEEAASGAVQCQLMDMVHPGVVPMHKVNFD 68
IGMMDSAYFVGR EIL+WIN L L+L++VEEAASGAVQCQ++DM PGVVPMHKVNFD
Sbjct: 4 NIGMMDSAYFVGRNEILTWINDRLHLNLSRVEEAASGAVQCQMLDMTFPGVVPMHKVNFD 63
Query: 69 AKTEYDMIQNYKILQDVFNKLRLSKNIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMN 128
AK EYDMIQNYK+LQDVFNKL+++K +E+N+LVKGRPLDNLEFLQWLKR+CDS+NGGIMN
Sbjct: 64 AKNEYDMIQNYKVLQDVFNKLKITKPLEINRLVKGRPLDNLEFLQWLKRFCDSINGGIMN 123
Query: 129 E-YVP 132
E Y P
Sbjct: 124 ENYNP 128
>AT5G62500.1 | chr5:25092929-25095006 FORWARD LENGTH=294
Length = 293
Score = 212 bits (539), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 95/124 (76%), Positives = 113/124 (91%), Gaps = 1/124 (0%)
Query: 10 IGMMDSAYFVGRGEILSWINATLQLSLAKVEEAASGAVQCQLMDMVHPGVVPMHKVNFDA 69
IGMMDSAYFVGR EILSWIN L L+L+++EEAASGAVQCQ++DM PGVVPMHKVNF+A
Sbjct: 5 IGMMDSAYFVGRNEILSWINDRLHLNLSRIEEAASGAVQCQMLDMTFPGVVPMHKVNFEA 64
Query: 70 KTEYDMIQNYKILQDVFNKLRLSKNIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNE 129
K EY+MIQNYK++Q+VF KL+++K +EVN+LVKGRPLDNLEFLQWLKR+CDS+NGGIMNE
Sbjct: 65 KNEYEMIQNYKVMQEVFTKLKITKPLEVNRLVKGRPLDNLEFLQWLKRFCDSINGGIMNE 124
Query: 130 -YVP 132
Y P
Sbjct: 125 NYNP 128
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,596,344
Number of extensions: 89773
Number of successful extensions: 224
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 3
Length of query: 135
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 47
Effective length of database: 8,693,961
Effective search space: 408616167
Effective search space used: 408616167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)