BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0639300 Os04g0639300|AK058483
(173 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G21960.1 | chr2:9354990-9356958 FORWARD LENGTH=333 277 2e-75
AT1G56180.1 | chr1:21026243-21028047 REVERSE LENGTH=390 95 2e-20
AT5G27290.1 | chr5:9618590-9620473 REVERSE LENGTH=342 77 4e-15
AT1G54680.1 | chr1:20413211-20414482 FORWARD LENGTH=224 56 1e-08
>AT2G21960.1 | chr2:9354990-9356958 FORWARD LENGTH=333
Length = 332
Score = 277 bits (709), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 139/173 (80%), Positives = 158/173 (91%)
Query: 1 LAIGSISPGLLQAAIGAFSTVFPDYQERIARHEAAHFLVAYLIGLPILGYSLDIGKEHVN 60
LA+GS+SPGLLQAAI FST FPDYQERIA HEAAHFLVAYLIGLPILGYSLDIGKEHVN
Sbjct: 160 LAVGSVSPGLLQAAISGFSTFFPDYQERIAAHEAAHFLVAYLIGLPILGYSLDIGKEHVN 219
Query: 61 LIDDQLQKLIYSGQLDQKEIDRLAVVSMAGLAAEGLEYDKVVGQSADLFTLQRFINRTKP 120
LID++L KLIYSG+LD KE+DRLA V+MAGLAAEGL+YDKV+GQSADLF+LQRFINR++P
Sbjct: 220 LIDERLAKLIYSGKLDSKELDRLAAVAMAGLAAEGLKYDKVIGQSADLFSLQRFINRSQP 279
Query: 121 PLTKDQQQNLTRWAVLFSASLLKNNKAAHEALMSAMSQKASVLGCIEAIENAS 173
++ +QQQNLTRWAVL+SASLLKNNK HEALM+AMS+ ASVL CI+ IE AS
Sbjct: 280 KISNEQQQNLTRWAVLYSASLLKNNKTIHEALMAAMSKNASVLECIQTIETAS 332
>AT1G56180.1 | chr1:21026243-21028047 REVERSE LENGTH=390
Length = 389
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 82/163 (50%), Gaps = 9/163 (5%)
Query: 19 STVFPDYQERIARHEAAHFLVAYLIGLPILGYSLDI---------GKEHVNLIDDQLQKL 69
S +P ++ RI HEA H LVAYL+G PI G LD G+ D +++
Sbjct: 222 SCYWPPHKRRIVVHEAGHLLVAYLMGCPIRGVILDPVVAMQMGVQGQAGTQFWDQKMESE 281
Query: 70 IYSGQLDQKEIDRLAVVSMAGLAAEGLEYDKVVGQSADLFTLQRFINRTKPPLTKDQQQN 129
I G+L DR ++V AG+AAE L Y + G D + +PPL+ Q N
Sbjct: 282 IAEGRLSGSSFDRYSMVLFAGIAAEALVYGEAEGGENDENLFRSISVLLEPPLSVAQMSN 341
Query: 130 LTRWAVLFSASLLKNNKAAHEALMSAMSQKASVLGCIEAIENA 172
RW+VL S +LLK +KAAH A + A+ + + I IE A
Sbjct: 342 QARWSVLQSYNLLKWHKAAHRAAVEALQVGSPLSIVIRRIEEA 384
>AT5G27290.1 | chr5:9618590-9620473 REVERSE LENGTH=342
Length = 341
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 13/159 (8%)
Query: 25 YQERIARHEAAHFLVAYLIGLPILGYSLD----IGKE-HVNL------IDDQLQKLIYSG 73
Y R+ +HEA HFLVAYL+G+ GY+L + KE +N+ +D + + + SG
Sbjct: 179 YHNRVVQHEAGHFLVAYLVGILPRGYTLSSLEALQKEGSLNIQAGSAFVDYEFLEEVNSG 238
Query: 74 QLDQKEIDRLAVVSMAGLAAEGLEYDKVVGQSADLFTLQRFINRTKPPLTKDQQQNLTRW 133
++ ++R + +++AG+A E L Y G D+ L + T+ + + RW
Sbjct: 239 KVSATMLNRFSCIALAGVATEYLLYGYAEGGLDDISKLDGLVKSL--GFTQKKADSQVRW 296
Query: 134 AVLFSASLLKNNKAAHEALMSAMSQKASVLGCIEAIENA 172
+VL + LL+ ++ A L AMS+ SV CI+ IE++
Sbjct: 297 SVLNTILLLRRHEIARSKLAQAMSKGESVGSCIQIIEDS 335
>AT1G54680.1 | chr1:20413211-20414482 FORWARD LENGTH=224
Length = 223
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 27/169 (15%)
Query: 29 IARHEAAHFLVAYLIGLPILGY---SLDIGKEHVNLID-----------------DQLQK 68
+ +HE+ HFLV YL+G+ Y +L+ +++V+ + +QL K
Sbjct: 51 VVQHESGHFLVGYLLGVLPRHYEIPTLEAVRQNVSNVTGRVEFVGFEFLKQVGAANQLMK 110
Query: 69 LIYSGQLDQ-----KEIDRLAVVSMAGLAAEGLEYDKVVGQSADLFTLQRFINRTKPPLT 123
GQ++Q K ++ + V + G+ E + + G +D+ L + T
Sbjct: 111 DDVDGQMNQGNISSKTLNNFSCVILGGMVTEHILFGYSEGLYSDIVKLNDVLRWL--GFT 168
Query: 124 KDQQQNLTRWAVLFSASLLKNNKAAHEALMSAMSQKASVLGCIEAIENA 172
+ +++ +WAV + SLL ++K A +L M++ + CIEAIE+A
Sbjct: 169 ESEKEAHIKWAVSNTVSLLHSHKEARVSLAETMAKAKPISTCIEAIESA 217
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,254,331
Number of extensions: 116010
Number of successful extensions: 317
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 4
Length of query: 173
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 81
Effective length of database: 8,584,297
Effective search space: 695328057
Effective search space used: 695328057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)