BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0635500 Os04g0635500|AK069933
         (87 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10270.1  | chr4:6374805-6375077 FORWARD LENGTH=91              71   1e-13
AT4G10265.1  | chr4:6373226-6373477 REVERSE LENGTH=84              70   2e-13
AT4G33560.1  | chr4:16135465-16135752 FORWARD LENGTH=96            48   9e-07

>AT4G10270.1 | chr4:6374805-6375077 FORWARD LENGTH=91
          Length = 90

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 52/92 (56%), Gaps = 7/92 (7%)

Query: 1  MAGAAKASWMVAMSVGAVEALKDQAGLCRWNYALRSIHRAAKANARAGVSRGKKLPXXXX 60
          M+  +KA W VA+S+GAVEALKDQ GLCRWNY LRS+++  + N R+ VS+GK+      
Sbjct: 1  MSSTSKA-WTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRS-VSQGKRFSSSSV 58

Query: 61 XXX-----XXXXXXXXXXXXXTVMYISCWSTN 87
                               TVMY+SCW  N
Sbjct: 59 SAAVTSSGESEKAKKAEESLRTVMYLSCWGPN 90



>AT4G10265.1 | chr4:6373226-6373477 REVERSE LENGTH=84
          Length = 83

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 1  MAGAAKASWMVAMSVGAVEALKDQAGLCRWNYALRSIHRAAKANARAGVSRGKKLPXXXX 60
          M+ A+K +WMVA S+GAVEALKDQ G+CRWNY +RS ++  + N R+ VS+ KKL     
Sbjct: 1  MSSASK-TWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRS-VSQAKKLS--SS 56

Query: 61 XXXXXXXXXXXXXXXXTVMYISCW 84
                          TVMY+SCW
Sbjct: 57 SIDYTNKTKQAEESLRTVMYLSCW 80



>AT4G33560.1 | chr4:16135465-16135752 FORWARD LENGTH=96
          Length = 95

 Score = 48.1 bits (113), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 1  MAGAAKASWMVAMSVGAVEALKDQAGLCRWNYALRSIHRAAKANAR 46
          M    +ASW VA ++ AVE LKDQ G+ RWNY  R +H+ A A  R
Sbjct: 1  MNAGKQASWAVATAIAAVEVLKDQ-GVARWNYLFRLLHKEAMARVR 45



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.124    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,146,826
Number of extensions: 22225
Number of successful extensions: 53
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 3
Length of query: 87
Length of database: 11,106,569
Length adjustment: 58
Effective length of query: 29
Effective length of database: 9,516,441
Effective search space: 275976789
Effective search space used: 275976789
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)