BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0626900 Os04g0626900|AK070625
(572 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G15160.1 | chr3:5104582-5108279 FORWARD LENGTH=563 636 0.0
>AT3G15160.1 | chr3:5104582-5108279 FORWARD LENGTH=563
Length = 562
Score = 636 bits (1641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/537 (61%), Positives = 422/537 (78%), Gaps = 12/537 (2%)
Query: 39 LLESVRRVCEMCKKAKGPSDEMVARAFPVMSKLFQRCAAAPTQSV--ASSGVLLLTILQF 96
+L+SV+++ CK K SD++VAR +P +K+F R A+ +QS AS G+LLL ILQF
Sbjct: 31 ILQSVKKLHGFCKMEK--SDDLVARIYPQFNKVFHRSVASLSQSESGASKGLLLLAILQF 88
Query: 97 FLDFGEAVLHDADGSLRTFFRSCLSREFADPIVAERTLEFLIANKTKILSSFPTLIPQFF 156
FLDFG+ VLHD+D SLRTFFRSCLSREF+D VAE T EFL+ N+ K+L+SFP L+PQFF
Sbjct: 89 FLDFGDMVLHDSDPSLRTFFRSCLSREFSDAAVAEATCEFLVVNQRKLLASFPNLLPQFF 148
Query: 157 PLLLKLIASNGERLERKFSEVLPLMMSAGSFLPLFLSLMDLPMLVVALEKVERSSGTLIG 216
PLLLKLIA N E+LE+ F ++ P ++S GSFLPLF S++DLP+LVVALEKVERSSG+
Sbjct: 149 PLLLKLIAWNWEKLEKSFLKIFPGLISPGSFLPLFPSIVDLPILVVALEKVERSSGSGSR 208
Query: 217 SS--IATIQKSAAPEMLLALMDEAYTGSAIEDAIGNAGSDDSGPLDLADPMFLDLLKDEN 274
IA+IQKSAAPEMLLALMDEAYTGS I D ++ S+D+ +D+ADP+FL+LLKDEN
Sbjct: 209 VGGSIASIQKSAAPEMLLALMDEAYTGSTIGDGGDDSESEDNNTIDVADPLFLELLKDEN 268
Query: 275 DGIAAKHWTSPTISSTLQAAVNSPQSDRLKQSLKMAPRFLTLYFATALRDVNDSLLCALI 334
DG+A +H SPT+++ LQAA + P+S+R+KQ+LK+APR L +YF+ LRD NDSL+CALI
Sbjct: 269 DGLAERHRASPTLNAALQAAASGPRSERMKQTLKIAPRLLDVYFSVTLRDANDSLICALI 328
Query: 335 PVVMSRYAAMFPDKVYSFEVRKRLSDFILAAFQRSPDIIALLKKPITDRLGEAHDNPAKT 394
P++M+R + MFPDK++S E+R+RL +F+LAAFQRSP+ IALLKKPI DRLGEA+D+ AK
Sbjct: 329 PLLMTRNSTMFPDKIFSHEIRRRLLEFVLAAFQRSPNFIALLKKPIIDRLGEAYDDVAKR 388
Query: 395 ELALHLCWAIGEHGAGGKNRKDVARXXXXXXXXXXXXXXATSRLGLSQDTGFDPMGASSR 454
ELAL LCWAIGE+G GG++ K+ AR ++SRLGL Q++ G SR
Sbjct: 389 ELALQLCWAIGEYGGGGESHKEAARELFESLELLVYENLSSSRLGLRQES-----GNGSR 443
Query: 455 KSSQARLLCFVVTAIAKLATFHNELLPRARVSLAKVARSRTSDRRVWQRACDYLGLLNEP 514
+++Q+RLLCFVVTAIAKLAT+H ELLPRARV+L KV +SR SD RVW+RA DYLGL+NEP
Sbjct: 444 RTTQSRLLCFVVTAIAKLATYHRELLPRARVALGKVVKSRISDARVWRRAHDYLGLMNEP 503
Query: 515 AICLSVLGPS-TAQGNGPGIVNWSEGGTKMVAHIPFYLLAEQKGAPIHDFSFDDLVP 570
IC SVLGPS ++ PG VNWSEGG KMVAHIPF++L+EQ G P HDF+F D++P
Sbjct: 504 GICWSVLGPSRVSEKRFPGTVNWSEGGQKMVAHIPFHILSEQGGPPFHDFAFSDIIP 560
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,160,039
Number of extensions: 434776
Number of successful extensions: 947
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 943
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 468
Effective length of database: 8,255,305
Effective search space: 3863482740
Effective search space used: 3863482740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)