BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0620000 Os04g0620000|J043003F04
(220 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G30400.1 | chr1:10728139-10737697 FORWARD LENGTH=1623 250 4e-67
AT2G34660.1 | chr2:14603267-14612387 FORWARD LENGTH=1624 248 2e-66
AT1G30410.1 | chr1:10739357-10747017 FORWARD LENGTH=1469 142 2e-34
AT1G30420.1 | chr1:10748816-10756316 FORWARD LENGTH=1496 141 3e-34
AT3G62700.1 | chr3:23190428-23195727 REVERSE LENGTH=1540 86 1e-17
AT2G47800.1 | chr2:19574944-19580383 FORWARD LENGTH=1517 84 6e-17
AT1G04120.1 | chr1:1064848-1070396 REVERSE LENGTH=1515 83 1e-16
AT3G13080.1 | chr3:4196019-4201250 REVERSE LENGTH=1515 82 2e-16
AT3G60160.1 | chr3:22223829-22229195 REVERSE LENGTH=1507 80 1e-15
AT3G60970.1 | chr3:22557535-22561575 FORWARD LENGTH=1054 80 1e-15
AT3G59140.1 | chr3:21863519-21868701 REVERSE LENGTH=1454 79 2e-15
AT3G13100.1 | chr3:4208859-4214173 REVERSE LENGTH=1494 79 2e-15
AT3G21250.2 | chr3:7457668-7463261 REVERSE LENGTH=1465 75 3e-14
AT3G13090.1 | chr3:4203013-4208171 REVERSE LENGTH=1467 75 4e-14
AT2G07680.1 | chr2:3514774-3522491 FORWARD LENGTH=1405 64 5e-11
AT4G28620.1 | chr4:14135526-14137953 REVERSE LENGTH=681 52 2e-07
AT4G25960.1 | chr4:13177438-13183425 FORWARD LENGTH=1274 51 4e-07
AT1G10680.1 | chr1:3538470-3543782 REVERSE LENGTH=1228 49 2e-06
AT4G28630.1 | chr4:14138535-14140895 REVERSE LENGTH=679 48 3e-06
>AT1G30400.1 | chr1:10728139-10737697 FORWARD LENGTH=1623
Length = 1622
Score = 250 bits (638), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 126/221 (57%), Positives = 159/221 (71%), Gaps = 2/221 (0%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLLS 60
TAAVDVRTD LIQKTIREEFKSCTMLIIAHRLNT+IDCD++L+L +GKV EF SPENLLS
Sbjct: 1401 TAAVDVRTDVLIQKTIREEFKSCTMLIIAHRLNTIIDCDKVLVLDSGKVQEFSSPENLLS 1460
Query: 61 NEHSAFSKMVQSTGPSNAEYLKTLVFGDGEER-LRKEESKMQDIQRKWVASNRWXXXXXX 119
N S+FSKMVQSTG +NAEYL+++ + R ++S+ + QRKW AS+RW
Sbjct: 1461 NGESSFSKMVQSTGTANAEYLRSITLENKRTREANGDDSQPLEGQRKWQASSRWAAAAQF 1520
Query: 120 XXXXXXXXXXXXXXXXXXXEGNNILRKTKDAVITLQNVLEGKHNTEIDDTLAQYEVPSDR 179
+ N+IL+KTKDAV+TL++VLEGKH+ EI+D+L Q ++ +R
Sbjct: 1521 ALAVSLTSSHNDLQSLEIEDDNSILKKTKDAVVTLRSVLEGKHDKEIEDSLNQSDISRER 1580
Query: 180 WWSSLYKVMEGLAMMSRLGRNRLQQPSYNFENNSSIDWDQM 220
WW SLYK++EGLA+MSRL RNR+Q P YN E S DWD +
Sbjct: 1581 WWPSLYKMVEGLAVMSRLARNRMQHPDYNLEGK-SFDWDNV 1620
>AT2G34660.1 | chr2:14603267-14612387 FORWARD LENGTH=1624
Length = 1623
Score = 248 bits (633), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/220 (56%), Positives = 162/220 (73%), Gaps = 4/220 (1%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLLS 60
TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT+IDCD++L+L +G+V EF SPENLLS
Sbjct: 1406 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDKILVLDSGRVQEFSSPENLLS 1465
Query: 61 NEHSAFSKMVQSTGPSNAEYLKTLVFGDGEERLRKEESKMQDIQRKWVASNRWXXXXXXX 120
NE S+FSKMVQSTG +NAEYL++LV + + K++S QRKW+AS+RW
Sbjct: 1466 NEGSSFSKMVQSTGAANAEYLRSLVL---DNKRAKDDSHHLQGQRKWLASSRWAAAAQFA 1522
Query: 121 XXXXXXXXXXXXXXXXXXEGNNILRKTKDAVITLQNVLEGKHNTEIDDTLAQYEVPSDRW 180
+ ++IL++T DAV+TL++VLEGKH+ EI ++L ++ + + W
Sbjct: 1523 LAASLTSSHNDLQSLEIEDDSSILKRTNDAVVTLRSVLEGKHDKEIAESLEEHNISREGW 1582
Query: 181 WSSLYKVMEGLAMMSRLGRNRLQQPSYNFENNSSIDWDQM 220
SSLY+++EGLA+MSRL RNR+QQP YNFE N + DWD +
Sbjct: 1583 LSSLYRMVEGLAVMSRLARNRMQQPDYNFEGN-TFDWDNV 1621
>AT1G30410.1 | chr1:10739357-10747017 FORWARD LENGTH=1469
Length = 1468
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 79/86 (91%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLLS 60
TA+VDVRTD+LIQ+TIREEFKSCTML+IAHRLNT+IDCD++L+LS+G+VLE+DSP+ LLS
Sbjct: 1372 TASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1431
Query: 61 NEHSAFSKMVQSTGPSNAEYLKTLVF 86
+ SAF +MV STGP+NA+YL LVF
Sbjct: 1432 RDTSAFFRMVHSTGPANAQYLSNLVF 1457
>AT1G30420.1 | chr1:10748816-10756316 FORWARD LENGTH=1496
Length = 1495
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/92 (71%), Positives = 80/92 (86%), Gaps = 3/92 (3%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLLS 60
TA+VDVRTD+LIQ+TIREEFKSCTMLIIAHRLNT+IDCD++L+LS+G+VLE+DSP+ LLS
Sbjct: 1399 TASVDVRTDSLIQRTIREEFKSCTMLIIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458
Query: 61 NEHSAFSKMVQSTGPSNAEYLKTLVF---GDG 89
+ SAF KMV STGP N +YL LVF G+G
Sbjct: 1459 RDTSAFFKMVHSTGPENGQYLSNLVFERRGNG 1490
>AT3G62700.1 | chr3:23190428-23195727 REVERSE LENGTH=1540
Length = 1539
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLLS 60
TA+VD +TDA+IQK IRE+F CT++ IAHR+ TV+DCDR+L++ AGK E+DSP LL
Sbjct: 1461 TASVDSQTDAMIQKIIREDFSDCTIISIAHRIPTVMDCDRVLVIDAGKAKEYDSPVRLLE 1520
Query: 61 NEHSAFSKMVQ 71
+ S F+ +VQ
Sbjct: 1521 RQ-SLFAALVQ 1530
>AT2G47800.1 | chr2:19574944-19580383 FORWARD LENGTH=1517
Length = 1516
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLLS 60
TA+VD +TDA+IQK IRE+F SCT++ IAHR+ TV+D DR+L++ AGK EFDSP LL
Sbjct: 1438 TASVDSQTDAVIQKIIREDFASCTIISIAHRIPTVMDGDRVLVIDAGKAKEFDSPARLLE 1497
Query: 61 NEHSAFSKMVQ 71
S F+ +VQ
Sbjct: 1498 RP-SLFAALVQ 1507
>AT1G04120.1 | chr1:1064848-1070396 REVERSE LENGTH=1515
Length = 1514
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 55/79 (69%), Gaps = 5/79 (6%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLLS 60
TA+VD TD LIQK IR EF+ CT+ IAHR+ TVID D +L+LS G+V EFD+P LL
Sbjct: 1432 TASVDTATDNLIQKIIRTEFEDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPARLLE 1491
Query: 61 NEHSAFSKMV-----QSTG 74
++ S F K+V +STG
Sbjct: 1492 DKSSMFLKLVTEYSSRSTG 1510
>AT3G13080.1 | chr3:4196019-4201250 REVERSE LENGTH=1515
Length = 1514
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 54/70 (77%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLLS 60
TA+VD TD LIQKT+RE F CT++ IAHR+++VID D +L+LS G + E+D+P LL
Sbjct: 1433 TASVDTATDNLIQKTLREHFSDCTVITIAHRISSVIDSDMVLLLSNGIIEEYDTPVRLLE 1492
Query: 61 NEHSAFSKMV 70
++ S+FSK+V
Sbjct: 1493 DKSSSFSKLV 1502
>AT3G60160.1 | chr3:22223829-22229195 REVERSE LENGTH=1507
Length = 1506
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 53/71 (74%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLLS 60
TA+VD TD +IQK I +EFK T++ IAHR++TVI+ D +L+LS G++ EFDSP LL
Sbjct: 1419 TASVDSATDGVIQKIINQEFKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQ 1478
Query: 61 NEHSAFSKMVQ 71
E S FSK+++
Sbjct: 1479 REDSFFSKLIK 1489
>AT3G60970.1 | chr3:22557535-22561575 FORWARD LENGTH=1054
Length = 1053
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 53/71 (74%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLLS 60
TA+VD TD +IQK I +EFK T++ IAHR++TVI+ D +L+LS G++ EFDSP LL
Sbjct: 966 TASVDSATDGVIQKIINQEFKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQ 1025
Query: 61 NEHSAFSKMVQ 71
E S FSK+++
Sbjct: 1026 REDSFFSKLIK 1036
>AT3G59140.1 | chr3:21863519-21868701 REVERSE LENGTH=1454
Length = 1453
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 53/71 (74%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLLS 60
TA++D TD ++QKTIR EF CT++ +AHR+ TV+DC +L +S G+++E+D P L+
Sbjct: 1371 TASIDNATDLILQKTIRREFADCTVITVAHRIPTVMDCTMVLSISDGRIVEYDEPMKLMK 1430
Query: 61 NEHSAFSKMVQ 71
+E+S F K+V+
Sbjct: 1431 DENSLFGKLVK 1441
>AT3G13100.1 | chr3:4208859-4214173 REVERSE LENGTH=1494
Length = 1493
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLLS 60
TA+VD TD LIQ+T+R+ F CT++ IAHR+++VID D +L+L G + E DSP LL
Sbjct: 1405 TASVDTATDTLIQETLRQHFSGCTVITIAHRISSVIDSDMVLLLDQGLIEEHDSPARLLE 1464
Query: 61 NEHSAFSKMV-QSTGPSNAEY 80
++ S+FSK+V + T S++ +
Sbjct: 1465 DKSSSFSKLVAEYTASSDSRF 1485
>AT3G21250.2 | chr3:7457668-7463261 REVERSE LENGTH=1465
Length = 1464
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLLS 60
TA++D TDA+IQ+ IREEF CT++ +AHR+ TVID D +++LS G ++E++ P L+
Sbjct: 1379 TASIDSATDAIIQRIIREEFADCTVITVAHRVPTVIDSDMVMVLSFGDLVEYNEPSKLME 1438
Query: 61 NEHSAFSKMV 70
+ S FSK+V
Sbjct: 1439 TD-SYFSKLV 1447
>AT3G13090.1 | chr3:4203013-4208171 REVERSE LENGTH=1467
Length = 1466
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 49/70 (70%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLLS 60
TA++D TD LIQ+T+R F CT++ IAHR+++VID D +L+L G + E DSP LL
Sbjct: 1383 TASIDTATDNLIQETLRHHFADCTVITIAHRISSVIDSDMVLLLDQGLIKEHDSPARLLE 1442
Query: 61 NEHSAFSKMV 70
+ S FSK+V
Sbjct: 1443 DRSSLFSKLV 1452
>AT2G07680.1 | chr2:3514774-3522491 FORWARD LENGTH=1405
Length = 1404
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLLS 60
TA +DV T +L+ TI E K T++ IAHR++TV+D D +LIL G ++E P++LL
Sbjct: 1331 TANIDVHTASLLHNTISSECKGVTVITIAHRISTVVDLDSILILDRGILVEQGKPQHLLQ 1390
Query: 61 NEHSAFSKMVQST 73
++ S FS V+++
Sbjct: 1391 DDSSTFSSFVRAS 1403
>AT4G28620.1 | chr4:14135526-14137953 REVERSE LENGTH=681
Length = 680
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLL 59
T+A+D +T+A I KT+R + T + IAHRL T + CD +L++ GKV+E + E LL
Sbjct: 603 TSALDSKTEAEIMKTLRSLASNRTCIFIAHRLTTAMQCDEILVMEKGKVVEKGTHEVLL 661
>AT4G25960.1 | chr4:13177438-13183425 FORWARD LENGTH=1274
Length = 1273
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 46/71 (64%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLLS 60
T+A+D ++ +Q+ + T +++AHRL+TV + D + ++ GK++EF + ENL+S
Sbjct: 567 TSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLIS 626
Query: 61 NEHSAFSKMVQ 71
N A+S +++
Sbjct: 627 NPDGAYSSLLR 637
>AT1G10680.1 | chr1:3538470-3543782 REVERSE LENGTH=1228
Length = 1227
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 45/71 (63%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLLS 60
T+A+D ++ ++Q+ + T +++AHRL+TV + D + ++ GK++E S + L+S
Sbjct: 527 TSALDAESEKIVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELIS 586
Query: 61 NEHSAFSKMVQ 71
N A+S +++
Sbjct: 587 NPDGAYSSLLR 597
>AT4G28630.1 | chr4:14138535-14140895 REVERSE LENGTH=679
Length = 678
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 1 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLL 59
T A+D +T+A I KT R + T + IAHRL T + CD ++++ GKV+E + + LL
Sbjct: 601 TNALDSKTEAEIMKTFRSLASNRTCIFIAHRLTTAMQCDEIIVMEKGKVVEKGTHQVLL 659
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,047,510
Number of extensions: 141534
Number of successful extensions: 459
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 30
Length of query: 220
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 125
Effective length of database: 8,502,049
Effective search space: 1062756125
Effective search space used: 1062756125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)