BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0619500 Os04g0619500|AK066247
(323 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G62940.2 | chr3:23263106-23264245 REVERSE LENGTH=333 293 1e-79
AT5G67170.1 | chr5:26799851-26801763 FORWARD LENGTH=376 63 2e-10
AT2G27350.5 | chr2:11699780-11702363 REVERSE LENGTH=507 60 2e-09
>AT3G62940.2 | chr3:23263106-23264245 REVERSE LENGTH=333
Length = 332
Score = 293 bits (749), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/303 (51%), Positives = 195/303 (64%), Gaps = 14/303 (4%)
Query: 29 TLEEVLSRHRKEKSKLQDKETSLXXXXXXXXXXXXXXXXXQVEEEISRXXXXXXXXXXXX 88
T+EE+L+RHR+E +LQ+KET + QVE++IS+
Sbjct: 27 TVEEMLARHRQEIKQLQNKETEMKKAAAKGSKAEQKAKKKQVEDDISKLSTKLKDKQLKE 86
Query: 89 XXTFGY---------KSSGSSEKGNMDTLVKAIAGVSVTSNADSAKPSKGXXXXXXXXXX 139
+ G+ K + +KG++DTLV+AIAGVSVT+ + +KPSK
Sbjct: 87 LASQGFSSSSSNNIAKDETTEKKGDIDTLVRAIAGVSVTAQQEHSKPSKSVKRREKRAKE 146
Query: 140 XXXXXXXXXXXXNNLVSDRMIENEKLEKKLEPMGLTIQEIKPDGHCLYRAVENQLSLYSR 199
+++ SDRM+EN KLEKKL+P+GLT+ EIKPDGHCLYRAVENQL+ S
Sbjct: 147 EADREQRIKEEQSHVKSDRMVENAKLEKKLKPLGLTVSEIKPDGHCLYRAVENQLANRSG 206
Query: 200 ETTQYNYQELRQMTANYMKEHAADFLPFFLSEGKVESGPDPLES-FKRYCEEVESTAAWG 258
+ Y YQ LR+M A+YM+EH DFLPFFLSE + +S E F++YC EVESTAAWG
Sbjct: 207 GASPYTYQNLREMAASYMREHKTDFLPFFLSETEGDSNSGSAEERFEKYCREVESTAAWG 266
Query: 259 GQLELGALTHCLKKRIVVYSGSFPDVEMGKEYKLDSGGKDGPSIRLSYHRHAYGLGEHYN 318
QLELGALTHCL+K I VYSGSFPDVEMGKEY+ SG D S+ LSYHRHA+GLGEHYN
Sbjct: 267 SQLELGALTHCLRKHIKVYSGSFPDVEMGKEYR--SG--DDSSLMLSYHRHAFGLGEHYN 322
Query: 319 SVV 321
SVV
Sbjct: 323 SVV 325
>AT5G67170.1 | chr5:26799851-26801763 FORWARD LENGTH=376
Length = 375
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 25/157 (15%)
Query: 164 KLEKKLEPMGLTIQEIKPDGHCLYRAVENQLSLYSRETTQYNYQELRQMTANYMKEHAAD 223
+ +L+ +GL I ++ DG+C +RA+ +QL E +Y R M Y+ ++
Sbjct: 27 QFRAQLDALGLKIIQVTADGNCFFRAIADQLEGNEDEHNKY-----RNMIVLYIVKNREM 81
Query: 224 FLPFFLSEGKVESGPDPLESFKRYCEEVESTAAWGGQLELGALTHCLKKRIVVYSGSFPD 283
F PF E V F+ YC+ ++ W G +EL A + + I ++ P
Sbjct: 82 FEPFI--EDDV--------PFEDYCKTMDDDGTWAGNMELQAASLVTRSNICIHRNMSP- 130
Query: 284 VEMGKEYKLDSGGKDGPSIRLSYHRHAYGLGEHYNSV 320
+ Y + I LSYH GEHYNSV
Sbjct: 131 ----RWYIRNFEDTRTRMIHLSYHD-----GEHYNSV 158
>AT2G27350.5 | chr2:11699780-11702363 REVERSE LENGTH=507
Length = 506
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 28/150 (18%)
Query: 173 GLTIQEIKPDGHCLYRAVENQLSLYSRETTQYNYQELRQMTANYMKEHAADFLPFFLSEG 232
G I+ + DG+CL+RAV +Q+ S Y RQM +YM E D F++EG
Sbjct: 215 GFEIRRMLEDGNCLFRAVADQVYGDSEA-----YDLARQMCMDYM-EQERDHFSQFITEG 268
Query: 233 KVESGPDPLESFKRYCEEVESTAAWGGQLELGALTHCLKKRIVVYSGSFPDVEMGK-EYK 291
F Y + +G +E+ AL + I +YS S + + + Y
Sbjct: 269 -----------FTSYLKRKRRDKVYGNNVEIQALAEMYNRPIHIYSYSTEPINIFQGNYS 317
Query: 292 LDSGGKDGPSIRLSYHRHAYGLGEHYNSVV 321
D+ P IRLSYH G HYNS+V
Sbjct: 318 TDT-----PPIRLSYHH-----GNHYNSLV 337
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.129 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,469,709
Number of extensions: 201520
Number of successful extensions: 381
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 3
Length of query: 323
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 224
Effective length of database: 8,392,385
Effective search space: 1879894240
Effective search space used: 1879894240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 112 (47.8 bits)