BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0612900 Os04g0612900|AK122039
         (107 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05780.1  | chr1:1726761-1728180 FORWARD LENGTH=107            102   4e-23
AT2G31710.1  | chr2:13482057-13482895 REVERSE LENGTH=106           80   2e-16

>AT1G05780.1 | chr1:1726761-1728180 FORWARD LENGTH=107
          Length = 106

 Score =  102 bits (254), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 66/107 (61%), Gaps = 1/107 (0%)

Query: 1   MSGVLAKFAIASAVMWTAPVAIVYGFYYQMIPGVXXXXXXXXXXASGFLAVISINLVIGF 60
           M+GV+ KF IAS  MW  PVAI+YGF + ++PG            SGFLAV+S+N VI F
Sbjct: 1   MAGVMHKFLIASMFMWILPVAILYGFNHNLLPGSTTLSPHSLILLSGFLAVVSVNTVIVF 60

Query: 61  YICMAMKETPHQEPQPDPTFLANAKASIDQPTPSQVNDDSHGKGKVE 107
           YICMAMKE P  + +PD  FLA AK S+++ T    + D H   K E
Sbjct: 61  YICMAMKE-PADKHKPDAAFLAEAKDSVNKLTKGATSSDDHALKKQE 106



>AT2G31710.1 | chr2:13482057-13482895 REVERSE LENGTH=106
          Length = 105

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 63/99 (63%), Gaps = 1/99 (1%)

Query: 1  MSGVLAKFAIASAVMWTAPVAIVYGFYYQMIPGVXXXXXXXXXXASGFLAVISINLVIGF 60
          M+GV+ KF IAS  MW  P+AI+YGF   ++PG            SGFLAV+S+N+VI F
Sbjct: 1  MAGVMQKFLIASMFMWILPIAILYGFNNDLLPGSTTLSPHSLTLLSGFLAVVSVNVVIVF 60

Query: 61 YICMAMKETPHQEPQPDPTFLANAKASIDQPTPSQVNDD 99
          YIC+A+KE P  + +PD +F+A AK S+ + T    N D
Sbjct: 61 YICLALKE-PADKHKPDASFVAEAKDSVKKLTSGVTNTD 98



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,174,714
Number of extensions: 71207
Number of successful extensions: 195
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 2
Length of query: 107
Length of database: 11,106,569
Length adjustment: 76
Effective length of query: 31
Effective length of database: 9,022,953
Effective search space: 279711543
Effective search space used: 279711543
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)