BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0603000 Os04g0603000|J075143D15
(92 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G57330.1 | chr5:23218392-23220664 FORWARD LENGTH=313 127 2e-30
AT5G14500.1 | chr5:4674503-4676368 REVERSE LENGTH=307 108 8e-25
AT3G01590.2 | chr3:226647-228346 FORWARD LENGTH=307 103 1e-23
AT3G61610.1 | chr3:22799480-22801029 FORWARD LENGTH=318 100 2e-22
AT4G23730.1 | chr4:12362955-12364792 FORWARD LENGTH=307 92 5e-20
AT4G25900.1 | chr4:13161487-13163397 FORWARD LENGTH=319 70 2e-13
>AT5G57330.1 | chr5:23218392-23220664 FORWARD LENGTH=313
Length = 312
Score = 127 bits (318), Expect = 2e-30, Method: Composition-based stats.
Identities = 53/73 (72%), Positives = 64/73 (87%)
Query: 19 FACVVLWNPWDKRTKNMQDFGDEEYKHMLCVEPAAVEKPITLKPGEEWKGKMDLSAVPSS 78
A V+WNPWDK++K + D GDE+YKHMLCVE AA+E+PITLKPGEEWKG+++LSAVPSS
Sbjct: 240 LADAVVWNPWDKKSKTISDLGDEDYKHMLCVEAAAIERPITLKPGEEWKGRLELSAVPSS 299
Query: 79 YCSGQLDPNKVLQ 91
Y SGQLDP KVL+
Sbjct: 300 YSSGQLDPKKVLE 312
>AT5G14500.1 | chr5:4674503-4676368 REVERSE LENGTH=307
Length = 306
Score = 108 bits (269), Expect = 8e-25, Method: Composition-based stats.
Identities = 45/69 (65%), Positives = 54/69 (78%)
Query: 24 LWNPWDKRTKNMQDFGDEEYKHMLCVEPAAVEKPITLKPGEEWKGKMDLSAVPSSYCSGQ 83
+WNPWDK+ K++ D GDE+Y MLCV+ A+E PI LKP EEWKG+ +LS V SSYCSGQ
Sbjct: 236 VWNPWDKKAKSIADMGDEDYTTMLCVDSGAIESPIVLKPHEEWKGRQELSIVSSSYCSGQ 295
Query: 84 LDPNKVLQG 92
LDP KVL G
Sbjct: 296 LDPRKVLYG 304
>AT3G01590.2 | chr3:226647-228346 FORWARD LENGTH=307
Length = 306
Score = 103 bits (258), Expect = 1e-23, Method: Composition-based stats.
Identities = 44/70 (62%), Positives = 53/70 (75%)
Query: 23 VLWNPWDKRTKNMQDFGDEEYKHMLCVEPAAVEKPITLKPGEEWKGKMDLSAVPSSYCSG 82
V+WNPWDK+ K + D GDE+YK MLCV+ +E + LKP EEWKG+ +LS V SSYCSG
Sbjct: 235 VVWNPWDKKAKTIADMGDEDYKTMLCVDSGVIEPLVLLKPREEWKGRQELSIVSSSYCSG 294
Query: 83 QLDPNKVLQG 92
QLDP KVL G
Sbjct: 295 QLDPRKVLYG 304
>AT3G61610.1 | chr3:22799480-22801029 FORWARD LENGTH=318
Length = 317
Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 54/64 (84%)
Query: 22 VVLWNPWDKRTKNMQDFGDEEYKHMLCVEPAAVEKPITLKPGEEWKGKMDLSAVPSSYCS 81
V+WNPW+K++K M DFGDEEYK MLCV+ AAVE+PITLKPGEEW G++ L+AV SS+C
Sbjct: 248 TVVWNPWEKKSKTMADFGDEEYKSMLCVDGAAVERPITLKPGEEWTGRLILTAVKSSFCF 307
Query: 82 GQLD 85
QL+
Sbjct: 308 DQLE 311
>AT4G23730.1 | chr4:12362955-12364792 FORWARD LENGTH=307
Length = 306
Score = 92.0 bits (227), Expect = 5e-20, Method: Composition-based stats.
Identities = 37/57 (64%), Positives = 48/57 (84%)
Query: 22 VVLWNPWDKRTKNMQDFGDEEYKHMLCVEPAAVEKPITLKPGEEWKGKMDLSAVPSS 78
VV+WNPW+K+ + + D GD+EY+HMLCV+ AA+EKPITLKPGEEW GK+ LS V S+
Sbjct: 250 VVVWNPWEKKARALTDLGDDEYRHMLCVDGAAIEKPITLKPGEEWTGKLHLSLVLST 306
>AT4G25900.1 | chr4:13161487-13163397 FORWARD LENGTH=319
Length = 318
Score = 70.5 bits (171), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 3/56 (5%)
Query: 23 VLWNPWDKRTKNMQDFGDEEYKHMLCVEPAAVEKPITLKPGEEWKGKMDLSAVPSS 78
V+WNPWDK+ + D G E+YK + VE AAV KPIT+ PG+EWKG + +S VPS+
Sbjct: 263 VVWNPWDKK---VSDLGVEDYKRFVTVESAAVAKPITVNPGKEWKGILHVSVVPSN 315
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,368,413
Number of extensions: 90729
Number of successful extensions: 214
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 6
Length of query: 92
Length of database: 11,106,569
Length adjustment: 63
Effective length of query: 29
Effective length of database: 9,379,361
Effective search space: 272001469
Effective search space used: 272001469
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)