BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0595800 Os04g0595800|AK058642
(273 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32050.1 | chr1:11528616-11530974 FORWARD LENGTH=265 372 e-103
AT1G61250.1 | chr1:22586035-22588664 FORWARD LENGTH=290 320 5e-88
AT1G11180.2 | chr1:3745829-3748307 FORWARD LENGTH=305 303 6e-83
AT2G20840.1 | chr2:8971925-8974400 REVERSE LENGTH=283 286 8e-78
AT1G03550.1 | chr1:885851-887778 REVERSE LENGTH=284 271 4e-73
>AT1G32050.1 | chr1:11528616-11530974 FORWARD LENGTH=265
Length = 264
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/272 (66%), Positives = 210/272 (77%), Gaps = 11/272 (4%)
Query: 2 HHDPNPFDEGNADDNPFSNXXXXXXXXXSRQQYGFRPTEPAGFGAGRGDATVDVPLDTMG 61
HHDPNPFDE NPFS R RP E +G DATVD+PLD M
Sbjct: 4 HHDPNPFDEDEEIVNPFSKGG-------GRVPAASRPVE---YGQSL-DATVDIPLDNMN 52
Query: 62 DSKSKARELSSWETDLKRREADIKRREEALRNAGVPMEDKNWPPFFPIIHHDIANEIPAN 121
DS K R+L+ WE +L+++E DIKRREEA+ GV ++DKNWPPFFPIIHHDIA EIP +
Sbjct: 53 DSSQKQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWPPFFPIIHHDIAKEIPVH 112
Query: 122 LQKLQYLAFASWLGIVLCLSWNFIAVIVCWIKEGDSKLFFLATIYALLGIPLSYLIWYRP 181
QKLQYLAFASWLGIVLCL +N IA +VCWIK G K+FFLATIYAL+G PLSY++WYRP
Sbjct: 113 AQKLQYLAFASWLGIVLCLVFNVIATMVCWIKGGGVKIFFLATIYALIGCPLSYVLWYRP 172
Query: 182 LYRAMRTNSAFSFGWFFLCYLIHIGFCIIAAIAPPIVFHGKSLTGILAAIDTFSEHVIIG 241
LYRAMRT+SA FGWFF YLIHIGFCI+AAIAPPI FHGKSLTG+LAAID S+ ++ G
Sbjct: 173 LYRAMRTDSALKFGWFFFTYLIHIGFCIVAAIAPPIFFHGKSLTGVLAAIDVISDSLLAG 232
Query: 242 IFYFVGFALFCLETLLSIGVLQRVYMYFRGNK 273
IFYF+GF LFCLE+LLS+ VLQ++Y+YFRGNK
Sbjct: 233 IFYFIGFGLFCLESLLSLWVLQKIYLYFRGNK 264
>AT1G61250.1 | chr1:22586035-22588664 FORWARD LENGTH=290
Length = 289
Score = 320 bits (820), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 157/273 (57%), Positives = 196/273 (71%), Gaps = 8/273 (2%)
Query: 2 HHDPNPFDEGNADDNPFSNXXXXXXXXXSRQQYGFRPTEPAGFGAGRGDATVDVPLDTMG 61
+DPNPF E + NPF+N SR P EP GF GR TVD+PLD G
Sbjct: 4 RYDPNPFAE-EEEVNPFANARGVPPASNSR--LSPLPPEPVGFDYGR---TVDIPLDRAG 57
Query: 62 --DSKSKARELSSWETDLKRREADIKRREEALRNAGVPMEDKNWPPFFPIIHHDIANEIP 119
D K K +EL + E +LKRRE D+KR+E+A AG+ +E KNWPPFFP+IHHDIANEIP
Sbjct: 58 TQDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIP 117
Query: 120 ANLQKLQYLAFASWLGIVLCLSWNFIAVIVCWIKEGDSKLFFLATIYALLGIPLSYLIWY 179
+LQ+LQY+ FA++LG+VLCL WN IAV WIK ++ LA IY + G+P Y++WY
Sbjct: 118 VHLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWY 177
Query: 180 RPLYRAMRTNSAFSFGWFFLCYLIHIGFCIIAAIAPPIVFHGKSLTGILAAIDTFSEHVI 239
RPLYRA RT+SA SFGWFFL Y++HI FC+ AA+APP+VF GKSL GIL AID S I
Sbjct: 178 RPLYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVVFKGKSLAGILPAIDVLSGQAI 237
Query: 240 IGIFYFVGFALFCLETLLSIGVLQRVYMYFRGN 272
+GIFYF+GFA FCLE+++SI V+Q+VYMYFRG+
Sbjct: 238 VGIFYFIGFAFFCLESVVSIWVIQQVYMYFRGS 270
>AT1G11180.2 | chr1:3745829-3748307 FORWARD LENGTH=305
Length = 304
Score = 303 bits (777), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 154/288 (53%), Positives = 196/288 (68%), Gaps = 23/288 (7%)
Query: 2 HHDPNPFDEGNADDNPFSNXXXXXXXXXSRQQYGFRPTEPAGFGAGRGDATVDVPLDTMG 61
+D N FDE + + NPF+N SR P EPAGFG GR TVD+PLD G
Sbjct: 4 RYDRNTFDEQD-EVNPFANPGSVPAASNSRLSP--LPPEPAGFGYGR---TVDIPLDRPG 57
Query: 62 -----------------DSKSKARELSSWETDLKRREADIKRREEALRNAGVPMEDKNWP 104
D K K +EL + E DL+RRE D+KR+++A AG+ +E KNWP
Sbjct: 58 SGAQNNSCLNVTLLGIQDLKKKEKELQAKEADLRRREQDLKRKQDAAARAGIVIEAKNWP 117
Query: 105 PFFPIIHHDIANEIPANLQKLQYLAFASWLGIVLCLSWNFIAVIVCWIKEGDSKLFFLAT 164
FFP+IHHDIANEI LQ+LQY+AFA++LG+VL L WN IAV WIK ++ LA
Sbjct: 118 TFFPLIHHDIANEILVRLQRLQYIAFATYLGLVLALFWNIIAVTTAWIKGEGVTIWLLAV 177
Query: 165 IYALLGIPLSYLIWYRPLYRAMRTNSAFSFGWFFLCYLIHIGFCIIAAIAPPIVFHGKSL 224
IY + G+P Y++WYRPLYRA R++SAF+FGWFFL Y++HI FC+ AA+APPIVF GKSL
Sbjct: 178 IYFISGVPGGYVLWYRPLYRAFRSDSAFNFGWFFLFYMLHILFCLFAAVAPPIVFKGKSL 237
Query: 225 TGILAAIDTFSEHVIIGIFYFVGFALFCLETLLSIGVLQRVYMYFRGN 272
GIL AID S ++GIFYF+GF LFCLE+++SI V+Q+VYMYFRG+
Sbjct: 238 AGILPAIDVLSAQALVGIFYFIGFGLFCLESVVSIWVIQQVYMYFRGS 285
>AT2G20840.1 | chr2:8971925-8974400 REVERSE LENGTH=283
Length = 282
Score = 286 bits (732), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 145/271 (53%), Positives = 194/271 (71%), Gaps = 10/271 (3%)
Query: 2 HHDPNPFDEGNADDNPFSNXXXXXXXXXSRQQYGFRPTEPAGFGAGRGDATVDVPLDTMG 61
+ + FD+G + NPF+N P P + G AT+D+PLD+
Sbjct: 3 RYQSHSFDDG--EINPFANPTSVPAATSK-----LSPLPPEPYDRG---ATMDIPLDSGK 52
Query: 62 DSKSKARELSSWETDLKRREADIKRREEALRNAGVPMEDKNWPPFFPIIHHDIANEIPAN 121
D K+K +EL E +LKRRE +IKR+E+A+ AG+ +E+KNWPPFFP+IHHDI+NEIP +
Sbjct: 53 DLKAKEKELREKEAELKRREQEIKRKEDAIAQAGIVIEEKNWPPFFPLIHHDISNEIPIH 112
Query: 122 LQKLQYLAFASWLGIVLCLSWNFIAVIVCWIKEGDSKLFFLATIYALLGIPLSYLIWYRP 181
LQ++QY+AF S LG+V+CL WN +AV WIK ++FLA IY + G+P +Y++WYRP
Sbjct: 113 LQRIQYVAFTSMLGLVVCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRP 172
Query: 182 LYRAMRTNSAFSFGWFFLCYLIHIGFCIIAAIAPPIVFHGKSLTGILAAIDTFSEHVIIG 241
LYRAMRT+SA FGWFF YL HI FC+ AA+APPI+F GKSLTGIL AID S ++++G
Sbjct: 173 LYRAMRTDSALKFGWFFFTYLFHIAFCVFAAVAPPIIFKGKSLTGILPAIDVLSGNILVG 232
Query: 242 IFYFVGFALFCLETLLSIGVLQRVYMYFRGN 272
IFYF+GF FCLE+L+SI V+Q+VYMYFRG+
Sbjct: 233 IFYFIGFGFFCLESLVSIWVIQQVYMYFRGS 263
>AT1G03550.1 | chr1:885851-887778 REVERSE LENGTH=284
Length = 283
Score = 271 bits (692), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 137/271 (50%), Positives = 184/271 (67%), Gaps = 9/271 (3%)
Query: 2 HHDPNPFDEGNADDNPFSNXXXXXXXXXSRQQYGFRPTEPAGFGAGRGDATVDVPLDTMG 61
HDPNPF + + NPF+N S +P P + G ATVD+PLD+
Sbjct: 3 RHDPNPF--ADEEINPFANHTSVPPASNSY----LKPLPPEPYDRG---ATVDIPLDSGN 53
Query: 62 DSKSKARELSSWETDLKRREADIKRREEALRNAGVPMEDKNWPPFFPIIHHDIANEIPAN 121
D ++K EL + E +LKR+E ++KRRE+A+ GV +E+KNWP FFP+IHHDI NEIP +
Sbjct: 54 DLRAKEMELQAKENELKRKEQELKRREDAIARTGVVIEEKNWPEFFPLIHHDIPNEIPIH 113
Query: 122 LQKLQYLAFASWLGIVLCLSWNFIAVIVCWIKEGDSKLFFLATIYALLGIPLSYLIWYRP 181
LQK+QY+AF + LG+V CL WN +AV V WIK ++ L+ IY L G+P +Y++WYRP
Sbjct: 114 LQKIQYVAFTTLLGLVGCLLWNIVAVTVAWIKGEGPTIWLLSIIYFLAGVPGAYVLWYRP 173
Query: 182 LYRAMRTNSAFSFGWFFLCYLIHIGFCIIAAIAPPIVFHGKSLTGILAAIDTFSEHVIIG 241
LYRA RT+SA FG FF Y+ HI FC AA+APP++F GKSLTG L AI+ + + +G
Sbjct: 174 LYRATRTDSALKFGAFFFFYVFHIAFCGFAAVAPPVIFQGKSLTGFLPAIELLTTNAAVG 233
Query: 242 IFYFVGFALFCLETLLSIGVLQRVYMYFRGN 272
I YF+G FC+ETLL+I V+Q+VY YFRG+
Sbjct: 234 IMYFIGAGFFCIETLLNIWVIQQVYAYFRGS 264
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.143 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,384,369
Number of extensions: 269842
Number of successful extensions: 786
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 777
Number of HSP's successfully gapped: 5
Length of query: 273
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 176
Effective length of database: 8,447,217
Effective search space: 1486710192
Effective search space used: 1486710192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)