BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0592600 Os04g0592600|AK071102
         (306 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17790.1  | chr4:9891425-9892675 FORWARD LENGTH=265            312   1e-85
AT4G09580.1  | chr4:6052721-6054313 REVERSE LENGTH=288            262   1e-70
AT1G71940.2  | chr1:27078781-27080191 FORWARD LENGTH=307          245   2e-65

>AT4G17790.1 | chr4:9891425-9892675 FORWARD LENGTH=265
          Length = 264

 Score =  312 bits (800), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 153/233 (65%), Positives = 179/233 (76%)

Query: 62  WEXXXXXXXXXXXXXXXXXXYLSMPDSDYSFLKLPRNLEELQILTGHLENYTSDYTIQVL 121
           WE                  YL+MP SDYSFLKLPRNLE+LQIL  +LE YTSDYT+QVL
Sbjct: 32  WEVTAASGVVLGFILGLVCVYLTMPQSDYSFLKLPRNLEDLQILRDNLEIYTSDYTVQVL 91

Query: 122 VGYCSVYIFMQTFMIPGTIFMSLLAGSLFGQLRXXXXXXXXXXXXXXXXXXXXKLIGKPL 181
           VGYC VY+FMQTFMIPGT+FMSLLAG+LFG ++                    KLIG+PL
Sbjct: 92  VGYCLVYVFMQTFMIPGTVFMSLLAGALFGVVKGMALVVSTATAGASSCYFLSKLIGRPL 151

Query: 182 VFSLWPDKLMFFQKQVAKRREKLLNYMLFLRVTPTLPNTFINLASPIVDVPYHIFLLATL 241
           +FSLWPDKL+FFQ QVA+R+++LLNYMLFLR+TPTLPNTFIN+ASPIVDVPYHIF LAT 
Sbjct: 152 LFSLWPDKLVFFQDQVARRKDRLLNYMLFLRLTPTLPNTFINVASPIVDVPYHIFFLATF 211

Query: 242 IGLIPASYVTVRAGIALGELTSLSDLYDTQSIALLFLIGIVSVTPTLLGKDEA 294
           IGLIPA++VTVRAG+ALGEL SL DLYD  S+A L LIG++SVTPTL+GK +A
Sbjct: 212 IGLIPAAFVTVRAGLALGELKSLGDLYDFSSMATLCLIGVLSVTPTLIGKKQA 264



>AT4G09580.1 | chr4:6052721-6054313 REVERSE LENGTH=288
          Length = 287

 Score =  262 bits (670), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 122/215 (56%), Positives = 164/215 (76%)

Query: 82  YLSMPDSDYSFLKLPRNLEELQILTGHLENYTSDYTIQVLVGYCSVYIFMQTFMIPGTIF 141
           YL+MP ++Y  LK+PR + +L++L  +L +Y S+Y  + ++GYCS YIFMQTFMIPGTIF
Sbjct: 73  YLTMPAAEYGKLKVPRTISDLRLLKENLGSYASEYQARFILGYCSTYIFMQTFMIPGTIF 132

Query: 142 MSLLAGSLFGQLRXXXXXXXXXXXXXXXXXXXXKLIGKPLVFSLWPDKLMFFQKQVAKRR 201
           MSLLAG+LFG +R                    KL+G+PLV  LWP+KL FFQ ++AKRR
Sbjct: 133 MSLLAGALFGVVRGFVLVVLNATAGACSCFFLSKLVGRPLVNWLWPEKLRFFQAEIAKRR 192

Query: 202 EKLLNYMLFLRVTPTLPNTFINLASPIVDVPYHIFLLATLIGLIPASYVTVRAGIALGEL 261
           ++LLNYMLFLR+TPTLPN FINL+SPIVD+P+H+F LATL+GL+PASY+TVRAG+ALG+L
Sbjct: 193 DRLLNYMLFLRITPTLPNLFINLSSPIVDIPFHVFFLATLVGLMPASYITVRAGLALGDL 252

Query: 262 TSLSDLYDTQSIALLFLIGIVSVTPTLLGKDEAQE 296
            S+ DLYD +++++LFLIG +S+ P LL +    E
Sbjct: 253 RSVKDLYDFKTLSVLFLIGSISIFPALLKRKRVYE 287



>AT1G71940.2 | chr1:27078781-27080191 FORWARD LENGTH=307
          Length = 306

 Score =  245 bits (626), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 148/191 (77%)

Query: 82  YLSMPDSDYSFLKLPRNLEELQILTGHLENYTSDYTIQVLVGYCSVYIFMQTFMIPGTIF 141
           Y++MP +++  LKLPR+L +L++L  +L NY ++Y  Q ++GYC+ YIFMQTFMIPGTIF
Sbjct: 58  YMTMPAAEFGKLKLPRSLADLRLLKDNLANYANEYPAQFVLGYCATYIFMQTFMIPGTIF 117

Query: 142 MSLLAGSLFGQLRXXXXXXXXXXXXXXXXXXXXKLIGKPLVFSLWPDKLMFFQKQVAKRR 201
           MSLLAG+LFG  +                    KLIG+PL+  LWPDKL FFQ +++KRR
Sbjct: 118 MSLLAGALFGVFKGVVLVVFNATAGATSCFFLSKLIGRPLITWLWPDKLRFFQAEISKRR 177

Query: 202 EKLLNYMLFLRVTPTLPNTFINLASPIVDVPYHIFLLATLIGLIPASYVTVRAGIALGEL 261
           +KLLNYMLFLR+TPTLPN FINLASPIVDVP+H+F LATLIGLIPA+Y+TVRAG+A+G+L
Sbjct: 178 DKLLNYMLFLRITPTLPNLFINLASPIVDVPFHVFFLATLIGLIPAAYITVRAGLAIGDL 237

Query: 262 TSLSDLYDTQS 272
            S+ DLYD ++
Sbjct: 238 KSVKDLYDFKT 248



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.142    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,311,078
Number of extensions: 145011
Number of successful extensions: 406
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 3
Length of query: 306
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 208
Effective length of database: 8,419,801
Effective search space: 1751318608
Effective search space used: 1751318608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)