BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0590100 Os04g0590100|Os04g0590100
(248 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G29000.1 | chr1:10113018-10114340 FORWARD LENGTH=288 90 1e-18
AT5G63530.1 | chr5:25433279-25435614 FORWARD LENGTH=356 71 6e-13
AT3G02960.1 | chr3:667245-668626 REVERSE LENGTH=247 67 6e-12
AT5G50740.3 | chr5:20635983-20637970 REVERSE LENGTH=291 62 2e-10
AT5G24580.1 | chr5:8410394-8412087 REVERSE LENGTH=320 60 1e-09
AT2G36950.1 | chr2:15515216-15516754 FORWARD LENGTH=387 56 2e-08
AT5G03380.1 | chr5:832400-834301 REVERSE LENGTH=393 55 4e-08
AT5G60800.2 | chr5:24460822-24462464 REVERSE LENGTH=303 53 1e-07
>AT1G29000.1 | chr1:10113018-10114340 FORWARD LENGTH=288
Length = 287
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 16/165 (9%)
Query: 6 AEQLVTAVYKVHVHCKQCANTIVTQFTQFPGVREVKLDGGKVTVKGIG-FDAEKLRKKVE 64
++++TAVYKVH+HC++CA I +F GV+ V D K +K G + K+ K++E
Sbjct: 11 GDEIITAVYKVHLHCRKCACDIKKPLLRFQGVQNVDFDLEKNEIKVKGKIEVVKIHKQIE 70
Query: 65 KGCRRRVELVPP-PKDI-----------VTEVKS---KKEELKIITVRVPLHCAECAARV 109
K +++VEL+ P P ++ V E K+ KK+ ++ ++V +HCA+C +
Sbjct: 71 KWSKKKVELISPKPSEVKKTTTTTTTTSVVEKKTTEIKKDVIRTTVLKVHIHCAQCDKDL 130
Query: 110 KEVLLEHKSIYAAKIDLGKNLCVVEGVIEEKKLFEYIYHRTRKYG 154
+ LL+HK+I+ K D V+G IE KL YI + K+
Sbjct: 131 QHKLLKHKAIHIVKTDTKAQTLTVQGTIESAKLLAYIKKKVHKHA 175
>AT5G63530.1 | chr5:25433279-25435614 FORWARD LENGTH=356
Length = 355
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 16/158 (10%)
Query: 13 VYKVHVHCKQCANTIVTQFTQFPGVREVKLD--GGKVTVKGIGFDAEKLRKKVEKGCRRR 70
V KV++HC+ CA + F GV +V D GKV VKG D K+ +V++ R+
Sbjct: 76 VLKVYMHCEGCARKVRRCLKGFEGVEDVMTDCKTGKVVVKGEKADPLKVLARVQRKTHRQ 135
Query: 71 VELVPPPKDIVTEVKSKKEELKIIT--------------VRVPLHCAECAARVKEVLLEH 116
V+L+ P + K EE K I ++V +HC CA +K+ ++
Sbjct: 136 VQLLSPIPPPPPPPEKKAEEDKPIVEEKKVEPPVVVTVVLKVHMHCEACATEIKKRIMRM 195
Query: 117 KSIYAAKIDLGKNLCVVEGVIEEKKLFEYIYHRTRKYG 154
K + +A+ DL + V+GV E +KL EY+Y RT K+
Sbjct: 196 KGVESAESDLKSSQVTVKGVFEPQKLVEYVYKRTGKHA 233
>AT3G02960.1 | chr3:667245-668626 REVERSE LENGTH=247
Length = 246
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 8/158 (5%)
Query: 5 KAEQLVTAVYKVHVHCKQCANTIVTQFTQFPGVREVKLDGG--KVTVKGIGFDAEKLRKK 62
K Q V KV++HC+ CA+ + + GV +K + G KV V G D K+ ++
Sbjct: 31 KKNQCKEIVLKVYMHCEGCASQVSHCLRGYDGVEHIKTEIGDNKVVVSGKFDDPLKILRR 90
Query: 63 VEKGCRRRVELVPP---PKDIVTEVKSKKE---ELKIITVRVPLHCAECAARVKEVLLEH 116
V+K R E++ P PK E + KKE E+K +R+ +HC C +K + +
Sbjct: 91 VQKKFSRNAEMISPKHNPKQDQKEPQQKKESAPEIKTAILRMNMHCEGCVHEIKRGIEKI 150
Query: 117 KSIYAAKIDLGKNLCVVEGVIEEKKLFEYIYHRTRKYG 154
K I + + D K+ VV GV++ KL E I + K+
Sbjct: 151 KGIQSVEPDRSKSTVVVRGVMDPPKLVEKIKKKLGKHA 188
>AT5G50740.3 | chr5:20635983-20637970 REVERSE LENGTH=291
Length = 290
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 15/157 (9%)
Query: 13 VYKVHVHCKQCANTIVTQFTQFPGVREVKLD--GGKVTVKGIGFDAEKLRKKVEKGCRRR 70
V K+ +HC+ CA I F GV +V D KV VKG D K+ +++++ R+
Sbjct: 37 VLKIFMHCEGCAKKIHRCLKGFEGVEDVTTDCKTSKVVVKGEKADPLKVLQRLQRKSHRQ 96
Query: 71 VELVPP---PKDI--------VTEVKSKKEELKIITV--RVPLHCAECAARVKEVLLEHK 117
VEL+ P PK + + K ++++ +++TV RV +HC CA +++ ++ K
Sbjct: 97 VELISPIPEPKPVSDEPEKKEKEKPKPEEKKEEVVTVVLRVHMHCEACAMEIQKRIMRMK 156
Query: 118 SIYAAKIDLGKNLCVVEGVIEEKKLFEYIYHRTRKYG 154
+ + + D + V+GV +KL E+IY R K+
Sbjct: 157 GVESVEPDFKASQVSVKGVFTPEKLVEFIYKRIGKHA 193
>AT5G24580.1 | chr5:8410394-8412087 REVERSE LENGTH=320
Length = 319
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 15/150 (10%)
Query: 16 VHVHCKQCANTIVTQFTQFPGVREVKLD--GGKVTVKGIGFDAEKLRKKVEKGCRRRVEL 73
V +HC CA I + GV EV +D +VT+KG+ D + + K++K +R ++
Sbjct: 62 VDLHCVGCAKKIERSILKIRGVEEVVMDMNENQVTIKGV-LDPQAVCNKIKKKTKRMAKV 120
Query: 74 VPP---------PKDIVTEVKSKKEELKIITVRVPLHCAECAARVKEVLLEHKSIYAAKI 124
+ P P I ++V L + + V +HC CA ++K+ +L+ + +
Sbjct: 121 LSPLPAAEGEPLPPIITSQVSGG---LTTVELSVNMHCQACADQLKKKILKMRGVQTTVT 177
Query: 125 DLGKNLCVVEGVIEEKKLFEYIYHRTRKYG 154
+ +V G ++ +KL +Y+Y RT+K
Sbjct: 178 EHTTGKVIVTGTMDAEKLVDYVYRRTKKQA 207
>AT2G36950.1 | chr2:15515216-15516754 FORWARD LENGTH=387
Length = 386
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 24/163 (14%)
Query: 13 VYKVHVHCKQCANTIVTQFTQFPGVREVKLD--GGKVTVKGIGFDAEKLRKKVEKGCRRR 70
VYKV +HC+ CA I F GV++V D G K+ V G D KL++K+E+ +R+
Sbjct: 53 VYKVDMHCEGCAKKIKRMVKHFDGVKDVTADTGGNKLLVVGK-IDPVKLQEKLEEKTKRK 111
Query: 71 VELV-PPPK---DIVTEVKSKKEEL-----------------KIITVRVPLHCAECAARV 109
V L PPPK + V KK + ++ +++ LHC C ++
Sbjct: 112 VVLANPPPKVEGPVAAAVGEKKADGGDKEAAPPAPAPAAPKESVVPLKIRLHCEGCIQKI 171
Query: 110 KEVLLEHKSIYAAKIDLGKNLCVVEGVIEEKKLFEYIYHRTRK 152
K+++L+ K + ID K++ V+G I+ K+L + + ++
Sbjct: 172 KKIILKIKGVETVAIDGAKDVVTVKGTIDVKELVPLLTKKLKR 214
>AT5G03380.1 | chr5:832400-834301 REVERSE LENGTH=393
Length = 392
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 50/193 (25%)
Query: 9 LVTAVYKVHVHCKQCANTIVTQFTQFPGVREVKLD--GGKVTVKGIGFDAEKLRKKVEKG 66
+ T V K+ +HC+ C I F F GV +VK+D K+TV G D ++R KV
Sbjct: 23 ITTVVMKLDMHCEGCGKKIKRIFKHFKGVEDVKIDYKSNKLTVIG-NVDPVEVRDKVADK 81
Query: 67 CRRRVELV----------PP--------PKDIVTEVKSKKEELKI--------------- 93
+R VELV PP P E ++K+ +
Sbjct: 82 IKRPVELVSTVAPPKKETPPSSGGAEKKPSPAAEEKPAEKKPAAVEKPGEKKEEKKKEEG 141
Query: 94 --------------ITVRVPLHCAECAARVKEVLLEHKSIYAAKIDLGKNLCVVEGVIEE 139
+ ++ LHC C ++K ++ + K + + ID K+L +V+G+I+
Sbjct: 142 EKKASPPPPPKESTVVLKTKLHCEGCEHKIKRIVNKIKGVNSVAIDSAKDLVIVKGIIDV 201
Query: 140 KKLFEYIYHRTRK 152
K+L Y+ + ++
Sbjct: 202 KQLTPYLNEKLKR 214
>AT5G60800.2 | chr5:24460822-24462464 REVERSE LENGTH=303
Length = 302
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 27/169 (15%)
Query: 10 VTAVYKVHVHCKQCANTIVTQFTQFPGVREVKLDG--GKVTVKGIGFDAEKLRKKVEKGC 67
+T V KV +HC+ CA+ IV F GV VK + GK+TV G D KLR+K+E+
Sbjct: 26 ITVVLKVDMHCEGCASRIVKCVRSFQGVETVKSESATGKLTVTG-ALDPVKLREKLEEKT 84
Query: 68 RRRVELVPPP----------------------KDIVTEVKSKKEELKIIT--VRVPLHCA 103
+++V+LV P K K +E + T +++ HC
Sbjct: 85 KKKVDLVSPQPKKEKEKENKNKNDEDKKKSEEKKKPDNNDKKPKETPVTTAVLKLNFHCQ 144
Query: 104 ECAARVKEVLLEHKSIYAAKIDLGKNLCVVEGVIEEKKLFEYIYHRTRK 152
C ++++ + + K + +D KNL V+G ++ KKL E + + ++
Sbjct: 145 GCIGKIQKTVTKTKGVNGLTMDKEKNLLTVKGTMDVKKLVEILSEKLKR 193
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,736,681
Number of extensions: 175685
Number of successful extensions: 600
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 579
Number of HSP's successfully gapped: 11
Length of query: 248
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 152
Effective length of database: 8,474,633
Effective search space: 1288144216
Effective search space used: 1288144216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)