BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0586200 Os04g0586200|AK120315
(104 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160 66 4e-12
AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178 66 4e-12
AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94 58 1e-09
AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127 54 2e-08
AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127 54 2e-08
AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163 52 4e-08
AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148 49 4e-07
AT3G63210.1 | chr3:23354019-23354906 REVERSE LENGTH=264 48 1e-06
AT5G65040.1 | chr5:25977864-25978350 REVERSE LENGTH=114 47 1e-06
AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151 45 7e-06
>AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160
Length = 159
Score = 65.9 bits (159), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 35/54 (64%)
Query: 9 FFFDAEPVGETGRHALDACALCTKPLRRDSDIFMYRGDTPFCSEECRYEQMHLD 62
F FD G H LD+C LC K L + DIFMYRGDTPFCSEECR EQ+ D
Sbjct: 62 FRFDNSYYGYGQPHFLDSCFLCKKRLGDNRDIFMYRGDTPFCSEECREEQIERD 115
>AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178
Length = 177
Score = 65.9 bits (159), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 32/41 (78%)
Query: 22 HALDACALCTKPLRRDSDIFMYRGDTPFCSEECRYEQMHLD 62
H LD+C LC KPL + DI+MYRGDTPFCSEECR EQ+ D
Sbjct: 96 HFLDSCFLCKKPLGDNRDIYMYRGDTPFCSEECRQEQIERD 136
>AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94
Length = 93
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 30/41 (73%)
Query: 22 HALDACALCTKPLRRDSDIFMYRGDTPFCSEECRYEQMHLD 62
H L++C+LC K L +SDIFMYRGD FCS ECR EQ+ D
Sbjct: 15 HFLESCSLCRKHLGLNSDIFMYRGDKAFCSNECREEQIESD 55
>AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127
Length = 126
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 24 LDACALCTKPLRRDSDIFMYRGDTPFCSEECRYEQMHLD 62
L C LC K L +D D++MYRGD FCS ECR QM +D
Sbjct: 43 LKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLID 81
>AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127
Length = 126
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 24 LDACALCTKPLRRDSDIFMYRGDTPFCSEECRYEQMHLD 62
L C LC K L +D D++MYRGD FCS ECR QM +D
Sbjct: 43 LKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLID 81
>AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163
Length = 162
Score = 52.4 bits (124), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 27/41 (65%)
Query: 22 HALDACALCTKPLRRDSDIFMYRGDTPFCSEECRYEQMHLD 62
H L +CALC + L DI+MYRGD FCS ECR EQM D
Sbjct: 88 HFLRSCALCERLLVPGRDIYMYRGDKAFCSSECRQEQMAQD 128
>AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148
Length = 147
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 15 PVGETGRHALD-------ACALCTKPLRRDSDIFMYRGDTPFCSEECRYEQMHLD 62
P G RH+ D +C+LC + L DI+MYRGD FCS ECR +Q+ +D
Sbjct: 63 PRGTQRRHSSDYSEDFLRSCSLCKRLLVHGRDIYMYRGDRAFCSLECRQQQITVD 117
>AT3G63210.1 | chr3:23354019-23354906 REVERSE LENGTH=264
Length = 263
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 24 LDACALCTKPLRRDSDIFMYRGDTPFCSEECRYEQMHLD 62
L C C K L + DI++YRG+ FCS ECRY++M LD
Sbjct: 221 LSRCFTCKKNLDQKQDIYIYRGEKGFCSSECRYQEMLLD 259
>AT5G65040.1 | chr5:25977864-25978350 REVERSE LENGTH=114
Length = 113
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 24 LDACALCTKPLRRDSDIFMYRGDTPFCSEECRYEQMHLD 62
L C+LC + L DI+MYRG+ FCS ECR +Q+ LD
Sbjct: 58 LKTCSLCNRSLCHHRDIYMYRGNNAFCSLECREKQIKLD 96
>AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151
Length = 150
Score = 45.1 bits (105), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 24 LDACALCTKPLRRDSDIFMYRGDTPFCSEECRYEQMHLD 62
L+ C LC + L DI+MY+GD FCS ECR +QM +D
Sbjct: 69 LEHCFLCRRKLLPAKDIYMYKGDRAFCSVECRSKQMIMD 107
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.135 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,869,752
Number of extensions: 57390
Number of successful extensions: 99
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 11
Length of query: 104
Length of database: 11,106,569
Length adjustment: 74
Effective length of query: 30
Effective length of database: 9,077,785
Effective search space: 272333550
Effective search space used: 272333550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)