BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0578200 Os04g0578200|AK073300
         (149 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46100.1  | chr2:18953326-18954467 FORWARD LENGTH=241           80   5e-16

>AT2G46100.1 | chr2:18953326-18954467 FORWARD LENGTH=241
          Length = 240

 Score = 79.7 bits (195), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 53/85 (62%), Gaps = 7/85 (8%)

Query: 57  ENAVLRAAWYGSELLGIAASFFRPSQPPTEGDSAGAVEEAASEPQGRA---QVAEAVKDD 113
           +N +L+ AWYGSELLGIAAS FR   P T     G   E   +  GRA    V +++K D
Sbjct: 57  DNVLLKIAWYGSELLGIAASVFR--SPETSPIVTGF--EVPVDCSGRAVRVAVVDSIKQD 112

Query: 114 FARSYFVTGNLTLKAYEEDCEFRRP 138
           F RSYFVTGNLT + YEE CEF  P
Sbjct: 113 FKRSYFVTGNLTPEVYEEKCEFADP 137



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.127    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,961,019
Number of extensions: 103997
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 60
Effective length of database: 8,666,545
Effective search space: 519992700
Effective search space used: 519992700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 107 (45.8 bits)