BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0577700 Os04g0577700|AK108703
(367 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G52525.1 | chr3:19475159-19475638 FORWARD LENGTH=160 64 1e-10
AT2G36026.1 | chr2:15127265-15127816 FORWARD LENGTH=184 64 1e-10
AT2G18500.1 | chr2:8027102-8028049 FORWARD LENGTH=316 59 5e-09
AT1G06920.1 | chr1:2124854-2125801 REVERSE LENGTH=316 57 1e-08
AT5G19650.1 | chr5:6639632-6640297 REVERSE LENGTH=222 55 4e-08
AT2G30400.1 | chr2:12956592-12957554 FORWARD LENGTH=321 51 8e-07
>AT3G52525.1 | chr3:19475159-19475638 FORWARD LENGTH=160
Length = 159
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 270 GSLAVVKQSEDPRGDFRRSMLNMIVENRIVTGDXXXXXXXXXXXXNAPHHHDAILRAFAE 329
S+AV K S+DP DFR+SML MI+EN+I + D N+ +HH I+RAF+E
Sbjct: 66 ASVAVEKDSDDPYLDFRQSMLQMILENQIYSKDELRELLQCFLSLNSHYHHGIIVRAFSE 125
Query: 330 IWDE 333
IW++
Sbjct: 126 IWED 129
>AT2G36026.1 | chr2:15127265-15127816 FORWARD LENGTH=184
Length = 183
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 276 KQSEDPRGDFRRSMLNMIVENRIVTGDXXXXXXXXXXXXNAPHHHDAILRAFAEIWDEVF 335
K S+DP DFR+SML MI+EN I + + N P+HH I+RAF+EIWD VF
Sbjct: 92 KDSDDPYLDFRQSMLQMILENEIYSKNDLRELLHCFLSLNEPYHHGIIIRAFSEIWDGVF 151
Query: 336 AG 337
+
Sbjct: 152 SA 153
>AT2G18500.1 | chr2:8027102-8028049 FORWARD LENGTH=316
Length = 315
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 38/69 (55%)
Query: 263 FTAGKLDGSLAVVKQSEDPRGDFRRSMLNMIVENRIVTGDXXXXXXXXXXXXNAPHHHDA 322
A + +AVVK+SEDP DF+ SM+ MIVE ++ NA HH A
Sbjct: 219 MAAAVMVEGVAVVKKSEDPYEDFKGSMMEMIVEKKMFEVAELEQLLSCFLSLNAKRHHRA 278
Query: 323 ILRAFAEIW 331
I+RAF+EIW
Sbjct: 279 IVRAFSEIW 287
>AT1G06920.1 | chr1:2124854-2125801 REVERSE LENGTH=316
Length = 315
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 252 RKTKSCDNNDGFTAGKLDGSLAVVKQSEDPRGDFRRSMLNMIVENRIVTGDXXXXXXXXX 311
R++KS N LD S AV+K S DP DFR SM+ MI EN I T +
Sbjct: 230 RRSKSRSQNKQI----LD-SFAVIKSSIDPSKDFRESMVEMIAENNIRTSNDMEDLLVCY 284
Query: 312 XXXNAPHHHDAILRAFAEIWDEVF 335
N +HD I++ F ++W EV
Sbjct: 285 LTLNPKEYHDLIIKVFVQVWLEVI 308
>AT5G19650.1 | chr5:6639632-6640297 REVERSE LENGTH=222
Length = 221
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 271 SLAVVKQSEDPRGDFRRSMLNMIVENRIVTGDXXXXXXXXXXXXNAPHHHDAILRAFAEI 330
S AVVK+S+DP DFR SM+ MIVE +I N+ HH I++ F EI
Sbjct: 155 SFAVVKKSKDPYEDFRTSMVEMIVERQIFAPAELQQLLQCFLSLNSRQHHKVIVQVFLEI 214
Query: 331 WDEVFA 336
+ +F+
Sbjct: 215 YATLFS 220
>AT2G30400.1 | chr2:12956592-12957554 FORWARD LENGTH=321
Length = 320
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 271 SLAVVKQSEDPRGDFRRSMLNMIVENRIVTGDXXXXXXXXXXXXNAPHHHDAILRAFAEI 330
S AV+K+S DP+ DFR SM+ MI EN I N +HD I+ F +I
Sbjct: 253 SFAVMKRSVDPKKDFRESMIEMIEENNIRASKDLEDLLACYLTLNPKEYHDLIIHVFEQI 312
Query: 331 WDEV 334
W ++
Sbjct: 313 WLQL 316
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,961,487
Number of extensions: 167635
Number of successful extensions: 450
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 447
Number of HSP's successfully gapped: 6
Length of query: 367
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 267
Effective length of database: 8,364,969
Effective search space: 2233446723
Effective search space used: 2233446723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)