BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0573200 Os04g0573200|AK120348
         (312 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12520.1  | chr1:4267277-4268900 REVERSE LENGTH=321            331   3e-91
AT2G28190.1  | chr2:12014548-12016303 FORWARD LENGTH=217           63   2e-10
AT1G08830.1  | chr1:2827700-2829053 FORWARD LENGTH=153             62   5e-10
AT5G18100.1  | chr5:5987221-5988706 FORWARD LENGTH=165             57   1e-08

>AT1G12520.1 | chr1:4267277-4268900 REVERSE LENGTH=321
          Length = 320

 Score =  331 bits (849), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 158/228 (69%), Positives = 185/228 (81%), Gaps = 2/228 (0%)

Query: 87  LPELMTEFMVDMKCDGCVTAVKNKFQTLEGIKNIEVDLNNQVVRVLGSLPVNTMLDTLHQ 146
           +P+L+TEFMVDM C+GCV AVKNK +T+EGI+ +EVDL+NQVVR+LGS PV  M   L Q
Sbjct: 84  MPQLLTEFMVDMTCEGCVNAVKNKLETIEGIEKVEVDLSNQVVRILGSSPVKAMTQALEQ 143

Query: 147 TGRDARLIGQGNPNDFLVSAAVAEFKGPVIFGVVRLAQVNMELAIVEATFSGLSPGKHGW 206
           TGR ARLIGQG P DFLVSAAVAEFKGP IFGVVR AQV+MELA +EA F+GLSPG H W
Sbjct: 144 TGRKARLIGQGVPQDFLVSAAVAEFKGPDIFGVVRFAQVSMELARIEANFTGLSPGTHSW 203

Query: 207 SINEFGDLTRGAESTGKVYNP-SDYRSNKPLGDLGTLEAGEKGEAQFSASKEKLKVVDLI 265
            INE+GDLT GA STG +YNP  D    +PLGDLGTLEA + GEA +S  KEKLKV DLI
Sbjct: 204 CINEYGDLTNGAASTGSLYNPFQDQTGTEPLGDLGTLEADKNGEAFYSGKKEKLKVADLI 263

Query: 266 GRSIALYATED-RSDPGIAAAVIARSAGVGENYKKLCTCDGVTIWESS 312
           GR++ +Y T+D +S PG+ AAVIARSAGVGENYKKLC+CDG  IWE++
Sbjct: 264 GRAVVVYKTDDNKSGPGLTAAVIARSAGVGENYKKLCSCDGTVIWEAT 311



>AT2G28190.1 | chr2:12014548-12016303 FORWARD LENGTH=217
          Length = 216

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 10/120 (8%)

Query: 167 AVAEFKGPV-IFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAESTGKVY 225
           AVA  KG   + GVV L Q +     V    +GL+PG HG+ ++EFGD T G  STG  +
Sbjct: 67  AVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHF 126

Query: 226 NPSDYRSNKP------LGDLGTLEAGEKGEAQFSASKEKLKVV---DLIGRSIALYATED 276
           NP++     P       GDLG + A   G A+ +    ++ +     ++GR+  ++  +D
Sbjct: 127 NPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKD 186



>AT1G08830.1 | chr1:2827700-2829053 FORWARD LENGTH=153
          Length = 152

 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 9/110 (8%)

Query: 176 IFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAESTGKVYNPSDYR---- 231
           + G +   Q    +  V  T SGL PG HG+ ++  GD T G  STG  +NP        
Sbjct: 14  VTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAP 73

Query: 232 --SNKPLGDLGTLEAGEKGEAQFSASKEKLKVV---DLIGRSIALYATED 276
             +N+  GDLG +  G+ G A F+ +  ++ +     ++GR++ ++A  D
Sbjct: 74  EDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPD 123



>AT5G18100.1 | chr5:5987221-5988706 FORWARD LENGTH=165
          Length = 164

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 11/126 (8%)

Query: 176 IFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAESTGKVYNPSDYRSNKP 235
           + G ++  Q       V    SGLSPG HG+ I+ FGD T G  STG  +NP +     P
Sbjct: 20  VRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGPP 79

Query: 236 ------LGDLGTLEAGEKGEAQFSASKEKLKV---VDLIGRSIALYATEDRSDPGIAAAV 286
                  GDLG + AG  G A+     + + +     ++GR++ ++A  D  D G     
Sbjct: 80  NEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHADPD--DLGKGGHK 137

Query: 287 IARSAG 292
           +++S G
Sbjct: 138 LSKSTG 143



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,068,462
Number of extensions: 191352
Number of successful extensions: 454
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 6
Length of query: 312
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 214
Effective length of database: 8,419,801
Effective search space: 1801837414
Effective search space used: 1801837414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)