BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0568600 Os04g0568600|Os04g0568600
         (195 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52190.1  | chr5:21201817-21202443 REVERSE LENGTH=209          157   3e-39

>AT5G52190.1 | chr5:21201817-21202443 REVERSE LENGTH=209
          Length = 208

 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 81/145 (55%), Positives = 100/145 (68%), Gaps = 1/145 (0%)

Query: 52  LMMRALCMRLAHLGLPAHCVGDVTAPPASPGDLLLASAGPGAFSTVDAICGVARGAGAHV 111
           LM++A  MRL H GLP H V D+T PP S  DLL+ASAGPG FSTVDA+C VA+  GA V
Sbjct: 64  LMLKAFAMRLFHFGLPTHLVFDMTTPPISSSDLLIASAGPGGFSTVDALCSVAKSNGAKV 123

Query: 112 VLLTAKPEGDFPRRQADVVAHLPAQTMADDEEATTESSPAKAK-LPMGSLYEGAMFVLFE 170
           +L+TA+P      + A  V ++PAQTMA D          + + LPMGS+YEGA+FVLFE
Sbjct: 124 ILITAEPAIGSCVKHATDVCYVPAQTMASDNGGGDSVEMGERRLLPMGSVYEGALFVLFE 183

Query: 171 MVVLELARVLGQSPAQMRARHTNLE 195
           MVV +L  VLG+S   +RARHTNLE
Sbjct: 184 MVVYKLGEVLGESSESVRARHTNLE 208



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,210,830
Number of extensions: 112789
Number of successful extensions: 247
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 102
Effective length of database: 8,556,881
Effective search space: 872801862
Effective search space used: 872801862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)