BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0566700 Os04g0566700|AK108551
         (98 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G17530.1  | chr1:6027723-6028286 FORWARD LENGTH=188             50   2e-07
AT1G72750.1  | chr1:27383577-27384143 FORWARD LENGTH=189           48   1e-06

>AT1G17530.1 | chr1:6027723-6028286 FORWARD LENGTH=188
          Length = 187

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%)

Query: 5   SRVLNQCGSLGRAYGNRLGVVALLFVGIESTVGGLRDADGWANTVAAGIGT 55
           +R+LN  G  GR +GNR+G+V L++ GIES V  + D D    +V AG+GT
Sbjct: 97  NRILNSSGQAGRTWGNRVGIVGLIYAGIESGVVAVTDKDDVWTSVVAGLGT 147



>AT1G72750.1 | chr1:27383577-27384143 FORWARD LENGTH=189
          Length = 188

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query: 5   SRVLNQCGSLGRAYGNRLGVVALLFVGIESTVGGLRDADGWANTVAAGIGT 55
           +R+LN  G  GR +GNR+G++ L++ GIES +    D D    +V AG+GT
Sbjct: 98  NRILNSSGQTGRTWGNRIGIIGLVYAGIESGIVAATDRDDVWTSVVAGLGT 148



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,311,379
Number of extensions: 31793
Number of successful extensions: 58
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 2
Length of query: 98
Length of database: 11,106,569
Length adjustment: 68
Effective length of query: 30
Effective length of database: 9,242,281
Effective search space: 277268430
Effective search space used: 277268430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)