BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0553800 Os04g0553800|AK067441
(428 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35710.1 | chr2:15010925-15014070 REVERSE LENGTH=498 620 e-178
AT4G16600.1 | chr4:9350039-9352707 FORWARD LENGTH=495 620 e-178
AT5G18480.1 | chr5:6131307-6133787 REVERSE LENGTH=538 123 2e-28
AT1G08990.1 | chr1:2888753-2890753 FORWARD LENGTH=567 81 9e-16
AT1G54940.1 | chr1:20481690-20484541 FORWARD LENGTH=558 72 4e-13
AT3G18660.2 | chr3:6419211-6421959 REVERSE LENGTH=660 66 4e-11
AT4G33330.2 | chr4:16059754-16063061 REVERSE LENGTH=627 63 3e-10
AT1G77130.1 | chr1:28979066-28981228 REVERSE LENGTH=619 62 8e-10
>AT2G35710.1 | chr2:15010925-15014070 REVERSE LENGTH=498
Length = 497
Score = 620 bits (1600), Expect = e-178, Method: Compositional matrix adjust.
Identities = 296/431 (68%), Positives = 353/431 (81%), Gaps = 4/431 (0%)
Query: 1 MMYMGTPRDYEFYVATRVMMRSLGRLGSDADRVVIASVDVPPRWVQALKD-DGVKVVSVE 59
MMYMGTPRDYEFYVATRV++RSL L +AD VVIAS+DVP RWVQ L++ DG KVV VE
Sbjct: 68 MMYMGTPRDYEFYVATRVLIRSLRSLHVEADLVVIASLDVPLRWVQTLEEEDGAKVVRVE 127
Query: 60 NLKNPYEKQGNFNMRFKLTLNKLYAWSLVSYDRVVMLDSDNIFLQNTDELFQCGQFCAVF 119
N+ NPY +Q NFN RFKLTLNKLYAW+L YDRVVMLD+DN+FL+ DELFQCG+FCAVF
Sbjct: 128 NVDNPYRRQTNFNSRFKLTLNKLYAWALSDYDRVVMLDADNLFLKKADELFQCGRFCAVF 187
Query: 120 INPCIFHTGLFVLQPSMDVFKNMLHELAVGRDNPDGADQGFLASYFPDLLDRPMFHPPVN 179
INPCIFHTGLFVLQPS++VFK+MLHEL VGR NPDGADQGFL SYF DLLD+P+F PP N
Sbjct: 188 INPCIFHTGLFVLQPSVEVFKDMLHELQVGRKNPDGADQGFLVSYFSDLLDQPLFSPPSN 247
Query: 180 GTKLEGTYRLPLGYQMDASYYYLKLRWSIPCGPNSVITFPSAPWFKPWYWWSWPVLPLGL 239
G+ L G RLPLGYQMDASY+YLKLRW+IPCGPNSVITFP A W KPWYWWSWPVLPLG
Sbjct: 248 GSVLNGHLRLPLGYQMDASYFYLKLRWNIPCGPNSVITFPGAVWLKPWYWWSWPVLPLGF 307
Query: 240 SWHEQRRENLGYSSELPVVLIQALFYIGVIAVTRLARPSLSKMCYNRRMEKSTIVLLTTL 299
SWHEQRR +GYS+E+P+V+IQA+FY+G+I VTRLARP+++K+CY RR +++ +
Sbjct: 308 SWHEQRRATIGYSAEMPLVIIQAMFYLGIIVVTRLARPNITKLCY-RRSDRNLTTIQAGF 366
Query: 300 RVVAAWSILAAYTIPFFLIPRTVHPLLGWPLYLLGAFSFSSIVINVFLLHPLAVLTTWLG 359
+++A S++AAY PFF IP T+HPL+GW LYL+ +F+ SSI IN LL L VLT WLG
Sbjct: 367 KLIALLSVVAAYIFPFFTIPHTIHPLIGWSLYLMASFALSSISINTLLLPTLPVLTPWLG 426
Query: 360 IIGALFVMAFPWYLNGVVRALAVFAYAFCCAPLIWGSLVKTMSSLQILIERDAF--RLGE 417
I+G L VMAFPWY +GVVRAL+VFAYAFCCAP +W S K S LQ+LIE++ RLG+
Sbjct: 427 ILGTLLVMAFPWYPDGVVRALSVFAYAFCCAPFVWVSFRKITSHLQVLIEKEVLFPRLGD 486
Query: 418 PNQTAEFTKLY 428
T+ F+KLY
Sbjct: 487 SGVTSGFSKLY 497
>AT4G16600.1 | chr4:9350039-9352707 FORWARD LENGTH=495
Length = 494
Score = 620 bits (1599), Expect = e-178, Method: Compositional matrix adjust.
Identities = 299/432 (69%), Positives = 354/432 (81%), Gaps = 5/432 (1%)
Query: 1 MMYMGTPRDYEFYVATRVMMRSLGRLGSDADRVVIASVDVPPRWVQALKD-DGVKVVSVE 59
MMYMGTPRDYEFYVATRV++RSL L DAD VVIAS+DVP W+ AL++ DG KVV VE
Sbjct: 64 MMYMGTPRDYEFYVATRVLIRSLKSLHVDADIVVIASLDVPINWIHALEEEDGAKVVRVE 123
Query: 60 NLKNPYEKQGNFNMRFKLTLNKLYAWSLVSYDRVVMLDSDNIFLQNTDELFQCGQFCAVF 119
NL+NPY+KQ NF+ RFKL+LNKLYAWSL YDRVVMLD DN+FL+NTDELFQCGQFCAVF
Sbjct: 124 NLENPYKKQTNFDNRFKLSLNKLYAWSLSDYDRVVMLDVDNLFLKNTDELFQCGQFCAVF 183
Query: 120 INPCIFHTGLFVLQPSMDVFKNMLHELAVGRDNPDGADQGFLASYFPDLLDRPMFH-PPV 178
INPCIFHTGLFVLQPSM+VF++MLHEL V RDNPDGADQGFL SYF DLL++P+F PP
Sbjct: 184 INPCIFHTGLFVLQPSMEVFRDMLHELEVKRDNPDGADQGFLVSYFSDLLNQPLFRPPPD 243
Query: 179 NGTKLEGTYRLPLGYQMDASYYYLKLRWSIPCGPNSVITFPSAPWFKPWYWWSWPVLPLG 238
N T L+G +RLPLGYQMDASYYYLKLRW++PCGPNSVITFP A W KPWYWWSWPVLPLG
Sbjct: 244 NRTALKGHFRLPLGYQMDASYYYLKLRWNVPCGPNSVITFPGAVWLKPWYWWSWPVLPLG 303
Query: 239 LSWHEQRRENLGYSSELPVVLIQALFYIGVIAVTRLARPSLSKMCYNRRMEKSTIVLLTT 298
LSWH QRR + YS+E+P VL QA+FY+G+I VTRLARP+++K+CY RR +K+ ++ T
Sbjct: 304 LSWHHQRRYTISYSAEMPWVLTQAVFYLGIILVTRLARPNMTKLCY-RRSDKNLSMIQTA 362
Query: 299 LRVVAAWSILAAYTIPFFLIPRTVHPLLGWPLYLLGAFSFSSIVINVFLLHPLAVLTTWL 358
+ VA IL+AY IPFF+IP+T+HPL+GW LYL G+F+ S+I IN FLL L V+T WL
Sbjct: 363 FKFVALLFILSAYIIPFFIIPQTIHPLIGWSLYLTGSFALSTIPINAFLLPILPVITPWL 422
Query: 359 GIIGALFVMAFPWYLNGVVRALAVFAYAFCCAPLIWGSLVKTMSSLQILIERDAF--RLG 416
GI G L VMAFP Y +GVVRAL+VF YAFCCAP +W S VK S LQI+I+++ RLG
Sbjct: 423 GIFGTLLVMAFPSYPDGVVRALSVFGYAFCCAPFLWVSFVKITSHLQIMIDKEVLFPRLG 482
Query: 417 EPNQTAEFTKLY 428
E T+ +KLY
Sbjct: 483 ESGVTSGLSKLY 494
>AT5G18480.1 | chr5:6131307-6133787 REVERSE LENGTH=538
Length = 537
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 120/241 (49%), Gaps = 12/241 (4%)
Query: 11 EFYVATRVMMRSLGRLGSDADRVVIASVDVPPRWVQALKDDGVKVVSVENLKNPYEKQGN 70
EF + RV+ +S+ GS D V + S V + LK DG KV + L NP +
Sbjct: 41 EFLLGVRVLGKSIRDTGSTKDMVALVSDGVSDYSKKLLKADGWKVEKISLLANPNQVHPT 100
Query: 71 FNMRFKLTLNKLYAWSLVSYDRVVMLDSDNIFLQNTDELFQCGQFCAVFINPCIFHTGLF 130
RF KL +++ Y +VV LD+D I ++N ++LF+C +FCA + ++G+
Sbjct: 101 ---RFWGVYTKLKIFNMTDYKKVVYLDADTIVVKNIEDLFKCSKFCANLKHSERLNSGVM 157
Query: 131 VLQPSMDVFKNMLHELAVGRDNPDGADQGFLASYFPDLLDRPMFHPPVNGTKLE-----G 185
V++PS +F +M+ ++ + G DQGFL SY+PD + +F P V L+
Sbjct: 158 VVEPSEALFNDMMRKVKT-LSSYTGGDQGFLNSYYPDFPNARVFDPSVTPEVLKTRPVPA 216
Query: 186 TYRLPLGYQMDASYYYLKLRWSIPCGPNSVITFPSAPWFKPWYWWS-WPVLPLGLSWHEQ 244
RL Y D Y L +W + VI + P KPW WW+ W V P+ +WH
Sbjct: 217 MERLSTLYNADVGLYMLANKWMVDDSKLHVIHYTLGP-LKPWDWWTAWLVKPVD-AWHSI 274
Query: 245 R 245
R
Sbjct: 275 R 275
>AT1G08990.1 | chr1:2888753-2890753 FORWARD LENGTH=567
Length = 566
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 7/157 (4%)
Query: 11 EFYVATRVMM-RSLGRLGSDADRVVIASVDVPPRWVQALKDDGVKVVSVENLKNPYEKQG 69
E YV + + +S+ + GS D +++ + + L G K+ VE +++P+ K+
Sbjct: 288 EVYVCGAIALAQSIRQSGSTKDMILLHDDSITNISLIGLSLAGWKLRRVERIRSPFSKKR 347
Query: 70 NFNMRFKLTLNKLYAWSLVSYDRVVMLDSDNIFLQNTDELFQCGQFCAVFINPCIFHTGL 129
++N + +KL W + YD++V +D+D I ++N D LF Q A N +F++G+
Sbjct: 348 SYN---EWNYSKLRVWQVTDYDKLVFIDADFIIVKNIDYLFSYPQLSAAGNNKVLFNSGV 404
Query: 130 FVLQPSMDVFKN-MLHELAVGRDNPDGADQGFLASYF 165
VL+PS +F++ ML +G N G DQGFL YF
Sbjct: 405 MVLEPSACLFEDLMLKSFKIGSYN--GGDQGFLNEYF 439
>AT1G54940.1 | chr1:20481690-20484541 FORWARD LENGTH=558
Length = 557
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 88/164 (53%), Gaps = 5/164 (3%)
Query: 3 YMGTPRDYEFYVATRVMM-RSLGRLGSDADRVVIASVDVPPRWVQALKDDGVKVVSVENL 61
Y+ E YV + + +S+ + GS D +++ + + + L G + ++ +
Sbjct: 273 YVTVLHSSEAYVCGAIALAQSIRQSGSHKDMILLHDHTITNKSLIGLSAAGWNLRLIDRI 332
Query: 62 KNPYEKQGNFNMRFKLTLNKLYAWSLVSYDRVVMLDSDNIFLQNTDELFQCGQFCAVFIN 121
++P+ ++ ++N + +KL W + YD++V +D+D I L+ D LF Q A +
Sbjct: 333 RSPFSQKDSYN---EWNYSKLRVWQVTDYDKLVFIDADFIILKKLDHLFYYPQLSASGND 389
Query: 122 PCIFHTGLFVLQPSMDVFKNMLHELAVGRDNPDGADQGFLASYF 165
+F++G+ VL+PS +FK+++ E + ++ +G DQGFL F
Sbjct: 390 KVLFNSGIMVLEPSACMFKDLM-EKSFKIESYNGGDQGFLNEIF 432
>AT3G18660.2 | chr3:6419211-6421959 REVERSE LENGTH=660
Length = 659
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 77/145 (53%), Gaps = 4/145 (2%)
Query: 21 RSLGRLGSDADRVVIASVDVPPRWVQALKDDGVKVVSVENLKNPYEKQGNFNMRFKLTLN 80
+S+ + GS D V++ ++ L+ G ++ +++ ++NP ++ +N + +
Sbjct: 343 QSIRQSGSTRDLVILVDDNISGYHRSGLEAAGWQIRTIQRIRNPKAEKDAYN---EWNYS 399
Query: 81 KLYAWSLVSYDRVVMLDSDNIFLQNTDELFQCGQFCAVFINPCIFHTGLFVLQPSMDVFK 140
K W L YD+++ +D+D + L+N D LF + A N +F++G+ V++P F+
Sbjct: 400 KFRLWQLTDYDKIIFIDADLLILRNIDFLFSMPEISATGNNGTLFNSGVMVIEPCNCTFQ 459
Query: 141 NMLHELAVGRDNPDGADQGFLASYF 165
+L E ++ +G DQG+L F
Sbjct: 460 -LLMEHINEIESYNGGDQGYLNEVF 483
>AT4G33330.2 | chr4:16059754-16063061 REVERSE LENGTH=627
Length = 626
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Query: 3 YMGTPRDYEFYVATRVMM-RSLGRLGSDADRVVIASVDVPPRWVQALKDDGVKVVSVENL 61
Y+ E YV + + +SL + + D +++ + ++AL G K+ + +
Sbjct: 303 YVTVLHSSESYVCGAITLAQSLLQTNTKRDLILLHDDSISITKLRALAAAGWKLRRIIRI 362
Query: 62 KNPYEKQGNFNMRFKLTLNKLYAWSLVSYDRVVMLDSDNIFLQNTDELFQCGQFCAVFIN 121
+NP ++ ++N + +K W L YD+V+ +D+D I L+N D LF Q A +
Sbjct: 363 RNPLAEKDSYN---EYNYSKFRLWQLTDYDKVIFIDADIIVLRNLDLLFHFPQMSATGND 419
Query: 122 PCIFHTGLFVLQPSMDVFKNMLHELAVGRDNPDGADQGFLASYF 165
I+++G+ V++PS F ++ + + + +G DQG+L F
Sbjct: 420 VWIYNSGIMVIEPSNCTFTTIMSQRSEIV-SYNGGDQGYLNEIF 462
>AT1G77130.1 | chr1:28979066-28981228 REVERSE LENGTH=619
Length = 618
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 5/156 (3%)
Query: 11 EFYVATRVMM-RSLGRLGSDADRVVIASVDVPPRWVQALKDDGVKVVSVENLKNPYEKQG 69
+FYV + +S+ GS D V++ + L G K+ + ++NP
Sbjct: 295 QFYVCGAIAAAQSIRMSGSTRDLVILVDETISEYHKSGLVAAGWKIQMFQRIRNPNAVPN 354
Query: 70 NFNMRFKLTLNKLYAWSLVSYDRVVMLDSDNIFLQNTDELFQCGQFCAVFINPCIFHTGL 129
+N + +K W L Y +++ +D+D + L+N D LF+ + A N +F++GL
Sbjct: 355 AYN---EWNYSKFRLWQLTEYSKIIFIDADMLILRNIDFLFEFPEISATGNNATLFNSGL 411
Query: 130 FVLQPSMDVFKNMLHELAVGRDNPDGADQGFLASYF 165
V++PS F+ ++ + + +G DQG+L F
Sbjct: 412 MVVEPSNSTFQLLMDNINEVV-SYNGGDQGYLNEIF 446
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.141 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,470,351
Number of extensions: 412822
Number of successful extensions: 1016
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1008
Number of HSP's successfully gapped: 8
Length of query: 428
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 327
Effective length of database: 8,337,553
Effective search space: 2726379831
Effective search space used: 2726379831
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 113 (48.1 bits)