BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0541900 Os04g0541900|Os04g0541900
         (295 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22290.1  | chr4:11783199-11785730 REVERSE LENGTH=446          132   2e-31
AT1G78880.1  | chr1:29653068-29654819 REVERSE LENGTH=469          124   4e-29
AT1G16860.1  | chr1:5768280-5770183 FORWARD LENGTH=475            122   2e-28

>AT4G22290.1 | chr4:11783199-11785730 REVERSE LENGTH=446
          Length = 445

 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 96/147 (65%), Gaps = 2/147 (1%)

Query: 108 FVDGLPASSLRSATDDQLVKITGLVACGDISLISSYEKVENCVYTSTLLRKCGRWGSEVA 167
           F+   P + LR A D Q VK+TG+V CG I L SS+++   CVY ST L +   +G + A
Sbjct: 237 FIKKYPDAELRGAIDGQFVKVTGVVTCGSIPLESSFQRTPRCVYVSTELYEYKGFGGKSA 296

Query: 168 NPKNRCSKWKLTHAERFAADFYITDAKSGKRALVKAGHDSRVVPLIDENLLV-TTSGNTE 226
           NPK+RC  W   HAE++ +DFYI+D +SG RALVKAG+ S+V P +    +   T+ N +
Sbjct: 297 NPKHRCFSWGSRHAEKYVSDFYISDFQSGLRALVKAGYGSKVSPFVKPATVANVTTQNKD 356

Query: 227 LSSTLRCWLDERNIPSEECQLIRLEEG 253
           LS +   WL +RN+ +++ +++RL+EG
Sbjct: 357 LSPSFLKWLSDRNLSADD-RVMRLKEG 382



>AT1G78880.1 | chr1:29653068-29654819 REVERSE LENGTH=469
          Length = 468

 Score =  124 bits (312), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/147 (42%), Positives = 97/147 (65%), Gaps = 2/147 (1%)

Query: 108 FVDGLPASSLRSATDDQLVKITGLVACGDISLISSYEKVENCVYTSTLLRKCGRWGSEVA 167
           F+   P + LR+A + Q VK+TG+V CG++ L SS+ +V  CVYTST L +   WGS+ A
Sbjct: 260 FIARYPDADLRTAKNGQYVKVTGVVTCGNVPLESSFHRVPRCVYTSTCLYEYRGWGSKPA 319

Query: 168 NPKNRCSKWKLTHAERFAADFYITDAKSGKRALVKAGHDSRVVPLIDENLLVT-TSGNTE 226
           N  +R   W L  AER   DFYI+D +SG RALVK G+ ++V PL+D+++++    GN +
Sbjct: 320 NASHRRFTWGLRSAERHVVDFYISDFQSGLRALVKTGNGAKVTPLVDDSVVIDFKPGNEQ 379

Query: 227 LSSTLRCWLDERNIPSEECQLIRLEEG 253
            S     WL ++N+ +++ +++RL+EG
Sbjct: 380 ASPDFVRWLGKKNLTNDD-RIMRLKEG 405



>AT1G16860.1 | chr1:5768280-5770183 FORWARD LENGTH=475
          Length = 474

 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 108/174 (62%), Gaps = 9/174 (5%)

Query: 108 FVDGLPASSLRSATDDQLVKITGLVACGDISLISSYEKVENCVYTSTLLRKCGRWGSEVA 167
           F+   P + LR+A + Q VK+TG+V CG++ L SS+ +V  CVYTST L +   WGS+ A
Sbjct: 266 FIARYPDADLRTAKNGQHVKVTGVVTCGNVPLESSFHRVPRCVYTSTCLYEYRGWGSKPA 325

Query: 168 NPKNRCSKWKLTHAERFAADFYITDAKSGKRALVKAGHDSRVVPLIDENLLV-TTSGNTE 226
           N  +R   W L  +ER   DFYI+D +SG RALVK G  ++V PL+D+++++    G+ +
Sbjct: 326 NSSHRHFTWGLRSSERHVVDFYISDFQSGLRALVKTGSGAKVTPLVDDSVVIDFKQGSEQ 385

Query: 227 LSSTLRCWLDERNIPSEECQLIRLEEGVHQSPS-------LQNQNDKRLYLPSS 273
           +S     WL ++N+ S++ +++RL+EG  +  S       +Q  ++  + +PSS
Sbjct: 386 VSPDFVRWLGKKNLTSDD-RIMRLKEGYIKEGSTVSVIGVVQRNDNVLMIVPSS 438



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.132    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,699,460
Number of extensions: 176135
Number of successful extensions: 467
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 466
Number of HSP's successfully gapped: 3
Length of query: 295
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 197
Effective length of database: 8,419,801
Effective search space: 1658700797
Effective search space used: 1658700797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)