BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0515300 Os04g0515300|AK121631
         (134 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20450.1  | chr2:8813923-8815071 FORWARD LENGTH=135            209   4e-55
AT4G27090.1  | chr4:13594104-13595187 REVERSE LENGTH=135          207   1e-54

>AT2G20450.1 | chr2:8813923-8815071 FORWARD LENGTH=135
          Length = 134

 Score =  209 bits (532), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 103/123 (83%), Positives = 112/123 (91%)

Query: 1   MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPDMVRCQINFKRLSLTDIKI 60
           M FKRFVEIGRVALVNYG+DYG+LVVIVDVVDQNRALVDAPDM R Q+N KRLSLTDI I
Sbjct: 1   MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVI 60

Query: 61  DIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGA 120
           DI RVPKK  LI+AME+ADVKNKWE SSWG+KLIVQKRRA+LNDFDRFK+MLAKIKR G 
Sbjct: 61  DINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGI 120

Query: 121 IRQ 123
           +RQ
Sbjct: 121 VRQ 123



>AT4G27090.1 | chr4:13594104-13595187 REVERSE LENGTH=135
          Length = 134

 Score =  207 bits (528), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 101/123 (82%), Positives = 113/123 (91%)

Query: 1   MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPDMVRCQINFKRLSLTDIKI 60
           M FKR+VEIGRVALVNYG+D+G+LVVIVDVVDQNRALVDAPDM R Q+NFKRLSLTDI I
Sbjct: 1   MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVI 60

Query: 61  DIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGA 120
           DI RVPKK  LI+AME+ADVKNKWE SSWG+KLIVQKRRA+LNDFDRFK+MLAKIK+ G 
Sbjct: 61  DINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGV 120

Query: 121 IRQ 123
           +RQ
Sbjct: 121 VRQ 123



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.139    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,463,232
Number of extensions: 88578
Number of successful extensions: 318
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 2
Length of query: 134
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 46
Effective length of database: 8,693,961
Effective search space: 399922206
Effective search space used: 399922206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 106 (45.4 bits)