BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0507800 Os04g0507800|AK111060
         (82 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G23360.1  | chr1:8295421-8296893 REVERSE LENGTH=262            120   2e-28

>AT1G23360.1 | chr1:8295421-8296893 REVERSE LENGTH=262
          Length = 261

 Score =  120 bits (301), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/82 (67%), Positives = 67/82 (81%)

Query: 1   LNDVLSLGQHRTWKRICVSWSRARRGDRVLDLCCGSGDLAFLLSQKVGLDGQVMAVDFSS 60
           LND+LSLGQHR WK + VSWS A++GD VLDLCCGSGDLAFLLS+KVG  G+VM +DFSS
Sbjct: 49  LNDLLSLGQHRIWKNMAVSWSGAKKGDYVLDLCCGSGDLAFLLSEKVGSTGKVMGLDFSS 108

Query: 61  QQLQTAASRQDQRWKPCYKNIK 82
           +QL  AA+RQ  + + CYK I+
Sbjct: 109 EQLAVAATRQSLKARSCYKCIE 130



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.135    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,736,940
Number of extensions: 52087
Number of successful extensions: 215
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 1
Length of query: 82
Length of database: 11,106,569
Length adjustment: 53
Effective length of query: 29
Effective length of database: 9,653,521
Effective search space: 279952109
Effective search space used: 279952109
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)