BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0505000 Os04g0505000|AK060812
(751 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G23360.1 | chr2:9949420-9952727 FORWARD LENGTH=899 202 8e-52
AT1G19835.1 | chr1:6856212-6859513 REVERSE LENGTH=983 115 8e-26
AT4G36120.1 | chr4:17093213-17096573 REVERSE LENGTH=997 114 2e-25
AT1G47900.1 | chr1:17647340-17651035 REVERSE LENGTH=1055 107 2e-23
AT3G19370.1 | chr3:6711046-6713494 FORWARD LENGTH=705 65 2e-10
>AT2G23360.1 | chr2:9949420-9952727 FORWARD LENGTH=899
Length = 898
Score = 202 bits (513), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 207/704 (29%), Positives = 355/704 (50%), Gaps = 114/704 (16%)
Query: 8 LRSCTEQLLRVREEKERLIIEAADKISLE-QKKVWSLQQKLEDANKRFAKVTTENYNLRN 66
L+ C +QL VREE+ER + +A K S E ++++ ++ +L + KR A+ EN L
Sbjct: 98 LKECVQQLRFVREEQERRMHDALTKASQEYERRLIVIKTELAGSGKRLAEAEGENAQLSK 157
Query: 67 IVNSKDKVITELSESAALLNQKLIDATARLEFTHKQCGSLQYEVRILQKELEIRNKEREF 126
+ +K+K + +L+ + + LE K+ SL+YEVR+L+KELE+RN+EREF
Sbjct: 158 ALLAKNKTVEDLNRERDRIEVDFNSLVSSLESKEKENVSLRYEVRVLEKELELRNEEREF 217
Query: 127 DLKSIDAAQKHQQESTKKITALETECQRLRTMVQKRLPGPAALAKMKDEVERRGSNCVEN 186
++ +A+ K E+ KK+ LE+ECQRLR +V+KRLPGPAAL+KM +EVE G
Sbjct: 218 SRRTAEASHKLHLENVKKVAKLESECQRLRVLVRKRLPGPAALSKMSNEVEMLG------ 271
Query: 187 RRRKPRSSAQSSPQVVTPR-HPVSEGYLVKMQELDDENRHLRQLLAKKENDLQFVQLQYA 245
RR+ S SP + + + + ++E + L++EN+ LR+ L KK ++LQF + Y+
Sbjct: 272 -RRRVNGSPH-SPMIDSEKINNLTEQLCL----LEEENKTLREALNKKVSELQFSRNMYS 325
Query: 246 DEASKLSVVQGQLKE--------------------LVGSHELDDDNR---PEPWANSSLV 282
AS+L + L+E L E D+D++ + WA S+L+
Sbjct: 326 RTASRLLEFESHLEESSRGTNIEPSRSSNVSHEVSLASVTEFDNDDKVSCADSWA-SALL 384
Query: 283 SKGEHFRVGKQHASHSRGRRIAGSDMQLLVDISEIEKLEMIS-----RPSSAPHQCVPDA 337
S+ ++F+ K+ + G A ++M+L+ D +E+EKL M++ RP S+P C D+
Sbjct: 385 SELDNFKNKKEMGTSLVGTPKA-AEMKLMDDFAEMEKLAMVASTIDNRPGSSP-ICSSDS 442
Query: 338 --------------SDTESKTALT-ETVCQDRILEDGL-SDKYPEWIQDVLELIIKKHQV 381
S +KT+ T ++ D +D + SD P+ + VL+ +++ +
Sbjct: 443 ISATGPVENESNENSSEATKTSGTVYSLNPDASPKDDIKSDSLPQSLHIVLKAVMEHKHI 502
Query: 382 LKISVDIIIDEIRSALRT----------------EISDKGNDAANVTYD-QAVIDSMVAT 424
+ + D ++++IR AL + + D+ + N++ +ID
Sbjct: 503 TQRNTDEVLEDIRKALSSVNHSSFSTNHQETKTLTVEDRLDMECNISKSIHRIID----- 557
Query: 425 LVERVSCMIERSSGN------NVLSSQSFLHEKSELTCHLEHLICVCSDVLDGKANLRKF 478
++E VS ER N + +++ + +EL+ L+ + C D+LD KA+++KF
Sbjct: 558 VIEGVSLKDERHVSNRESERLSGYTARVLQWKTTELSSVLQRFLQACYDLLDRKADMKKF 617
Query: 479 IEEVCLTLEWTVNQYIYCVDALETVDCITNDFDGNVSLRSLNMQEKQQMQSTNPKVAVGV 538
+E+ LEW VN D D I F+ + S + +V +G+
Sbjct: 618 AQELSSVLEWMVNHCFSLQDVSTMRDEIKKQFEWDES-------------RSGSEVDIGI 664
Query: 539 QQEVQKEPFLIPGDPVENHSQVQFVTCKLDKELLAVRQDHGDNCQEKQSVHYKEESATAD 598
++V + L D V F+ CK D+ + G+ +++V + TA
Sbjct: 665 FRQVSEAEKLRTED-------VSFLACK-DQ---LIEDKPGNQNLSRKTVEEEANDKTAS 713
Query: 599 GSMQLLPEEEGKQL-TNSAISAAADKLAECQETITSLSKKLQAL 641
S L EE + + T I+AA++KLAECQETI +L K+L+AL
Sbjct: 714 ASENELKLEEKQNMRTELEIAAASEKLAECQETILNLGKQLKAL 757
>AT1G19835.1 | chr1:6856212-6859513 REVERSE LENGTH=983
Length = 982
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 144/276 (52%), Gaps = 24/276 (8%)
Query: 4 MEDSLRSCTEQLLRVREEKERLIIEAADKISLEQKKVWSLQQKLE----DANKRFAKVTT 59
++ +L+ C Q+ ++EE E+ + D I+ + ++ +L+ + E + + +
Sbjct: 131 LDGALKECMRQIRSLKEENEQKL---HDVIATKTNQMDNLRAEFESRIGEYEEELLRCGA 187
Query: 60 ENYNLRNIVNSKDKVITELSESAALLNQKLIDATARLEFTHKQCGSLQYEVRILQKELEI 119
EN L + + ++ +SE + ++ +E ++ +L+YE ++ KELEI
Sbjct: 188 ENDALSRSLQERSNMLMRISEEKSQAESEIEHLKNNIESCEREINTLKYETHVITKELEI 247
Query: 120 RNKEREFDLKSIDAAQKHQQESTKKITALETECQRLRTMVQKRLPGPAALAKMKDEVERR 179
RN+E+ ++S +AA K E KKI LE ECQRLRT+V+K+LPGPAALA+MK EVE
Sbjct: 248 RNEEKNMSMRSAEAANKQHLEGVKKIAKLEAECQRLRTLVRKKLPGPAALAQMKMEVESL 307
Query: 180 GSNCVENRRRKPRSSAQSSPQVVTP---RHPVSEGYLVKMQELDDEN------------- 223
G R+ RS + S +++P VSE L MQ+ EN
Sbjct: 308 GFGDHRQDHRQRRSPVRPSSPLMSPMSHMSQVSEFSLDNMQKFHKENDLLTERLLAMEEE 367
Query: 224 -RHLRQLLAKKENDLQFVQLQYADEASKLSVVQGQL 258
+ L++ LAK+ ++LQ + A A++L ++ Q+
Sbjct: 368 TKMLKEALAKRNSELQVSRNLCAKTANRLQTLEAQM 403
>AT4G36120.1 | chr4:17093213-17096573 REVERSE LENGTH=997
Length = 996
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 159/309 (51%), Gaps = 31/309 (10%)
Query: 2 TEMEDSLRSCTEQLLRVREEKERLIIEAA-------DKISLEQKKVWSLQQKLEDANKRF 54
+ ++D+L+ CT Q+ V+EE ++ + + DKI E L+ K+++ ++
Sbjct: 139 SHLDDALKECTRQIRIVKEESDKKLQDVILAKTSQWDKIKAE------LEGKIDELSEGL 192
Query: 55 AKVTTENYNLRNIVNSKDKVITELSESAALLNQKLIDATARLEFTHKQCGSLQYEVRILQ 114
+ ++N L + + ++I +SE + + L+ K+ L+Y++ +
Sbjct: 193 HRAASDNAALTRSLQERSEMIVRISEERSKAEADVEKLKTNLQLAEKEISYLKYDLHVAS 252
Query: 115 KELEIRNKEREFDLKSIDAAQKHQQESTKKITALETECQRLRTMVQKRLPGPAALAKMKD 174
KE+EIRN+E+ LKS D A K E KKI LE EC RLR +++K+LPGPAA+A+MK
Sbjct: 253 KEVEIRNEEKNMSLKSADIANKQHLEGVKKIAKLEAECHRLRGLLRKKLPGPAAMAQMKL 312
Query: 175 EVERRGSNCVENRRRKPRS---SAQSSPQVVTPRHPVSEG-----YLVKMQ-ELDDENRH 225
EVE G + R ++ S +A + ++ H + E YL + E+++E +
Sbjct: 313 EVEGLGHEFTDPRAQRNMSQNHNAHIAKAEISTDHKLEECKRENVYLTRRTLEMEEEIQT 372
Query: 226 LRQLLAKKENDLQFVQLQYADEASKLSVVQGQLKELVGSHELDDDNRPEPWANSSLVSKG 285
L++ L+ + N+LQ + A KL +++GQ+ H ++D + P +NS +S
Sbjct: 373 LKEHLSARNNELQVSRNVCAKTLGKLKILEGQM------HMFNND-KNAPKSNSRNLS-- 423
Query: 286 EHFRVGKQH 294
E G H
Sbjct: 424 ESLSSGHDH 432
>AT1G47900.1 | chr1:17647340-17651035 REVERSE LENGTH=1055
Length = 1054
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 147/275 (53%), Gaps = 20/275 (7%)
Query: 4 MEDSLRSCTEQLLRVREEKE-RLIIEAADKISLEQKKVWSLQQKLEDANKRFAKVTTENY 62
++ +L+ C Q+ ++++ E +L A K +K ++++ D + + ++
Sbjct: 181 LDGALKECMRQIRNLKKDHEVKLHDVALSKTKQIEKMTMEFEKRMCDYEQELLRSAADSD 240
Query: 63 NLRNIVNSKDKVITELSESAALLNQKLIDATARLEFTHKQCGSLQYEVRILQKELEIRNK 122
L + + ++ ++SE + + ++ + LE ++ SL+YEV ++ KELEIRN+
Sbjct: 241 ALSRTLQERSNMLVKVSEEKSRADAEIETLKSNLEMCEREIKSLKYEVHVVSKELEIRNE 300
Query: 123 EREFDLKSIDAAQKHQQESTKKITALETECQRLRTMVQKRLPGPAALAKMKDEVERRGSN 182
E+ ++S ++A K E KKI LE ECQRLR++V+K+LPGPAALA+MK EVE G +
Sbjct: 301 EKNMCIRSAESANKQHLEGVKKIAKLEAECQRLRSLVRKKLPGPAALAQMKLEVENLGRD 360
Query: 183 CVENRRRKPRSSAQSSPQVVTPRHPVSEG----------------YLV-KMQELDDENRH 225
+ R++ RS + S +P S G +L ++ +++E +
Sbjct: 361 SGDARQK--RSPVKVSSPCKSPGGYSSTGSEFSLDNAQKFQKENEFLTERLLAMEEETKM 418
Query: 226 LRQLLAKKENDLQFVQLQYADEASKLSVVQGQLKE 260
L++ LAK+ ++L + A SKL ++ QL++
Sbjct: 419 LKEALAKRNSELLESRNLCAQSTSKLQSLEAQLQQ 453
>AT3G19370.1 | chr3:6711046-6713494 FORWARD LENGTH=705
Length = 704
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 5/187 (2%)
Query: 47 LEDANKRFAKVTTENYNLRNIVNSKDKVITELSESAALLNQKLIDATARLEFTHKQCGSL 106
L D + + EN L+ + +K+++ L E + + RL+ T K+ L
Sbjct: 145 LVDMKTKIQTLAAENTQLKKSLVAKEELAVSLQERKFQVESEFEALMTRLDSTEKENAFL 204
Query: 107 QYEVRILQKELEIRNKEREFDLKSIDAAQKHQQESTKKITALETECQRLRTMVQKRLPGP 166
+YE +L+K+L+++ +E E +S++ K Q + KI LE ECQRLR + +K+ P
Sbjct: 205 RYEYTVLEKDLQVKTEETEHTRRSMELTHKQQLRNVNKIVELEAECQRLRLLFRKKFPEK 264
Query: 167 AALAKMKDEVERRGSNCVENRRRKPRSSAQSSPQVVTPRHPVSEGYLVKMQELDDENRHL 226
+ M++E E + +E RRR S V R + + ++ + EN++L
Sbjct: 265 S--ISMRNEGEEKK---MEMRRRNANKSDMMMRDEVQSRKLKYDLLMEQIGNVRAENKNL 319
Query: 227 RQLLAKK 233
++ KK
Sbjct: 320 MDIIMKK 326
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.128 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,408,014
Number of extensions: 647064
Number of successful extensions: 2348
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2342
Number of HSP's successfully gapped: 12
Length of query: 751
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 645
Effective length of database: 8,200,473
Effective search space: 5289305085
Effective search space used: 5289305085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 116 (49.3 bits)