BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0503700 Os04g0503700|AK063355
         (497 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02410.1  | chr5:517319-519634 REVERSE LENGTH=510              442   e-124

>AT5G02410.1 | chr5:517319-519634 REVERSE LENGTH=510
          Length = 509

 Score =  442 bits (1137), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/467 (48%), Positives = 302/467 (64%), Gaps = 5/467 (1%)

Query: 35  RGSGRMGDPMITTPPGLYYISLAYVASLFPGAWVTR-IAEAFDALCTTALLRSTNVIMAM 93
            G+ R  DPMITTPPGLYY+SLA+VASLFPG  +    +++F   C+T++LRSTN + A+
Sbjct: 44  NGNFRSWDPMITTPPGLYYLSLAHVASLFPGMLLMENTSQSFSEACSTSVLRSTNAVSAV 103

Query: 94  ICGVLVHDLLLCIRPKIGKRKATAFAILVALYPIHWFFTFLYYTDVASLAAVLAMYLFCL 153
           +CGVLV++++  + P +  RKAT  A++++LYP+HWFFTFLYYTDVASL AVLAMYL CL
Sbjct: 104 LCGVLVYEIIRFLGPNLSDRKATFMALVMSLYPLHWFFTFLYYTDVASLTAVLAMYLTCL 163

Query: 154 KKQFWVSAAFGAFSILLRQTNVIWMIFFAANGAIAHAQYLYVKDNVCYENSELTDKSNKE 213
           K+++ +SA FG  ++ +RQTNV+WM+F A +G +        +      N EL   SNK+
Sbjct: 164 KRRYVLSALFGTLAVFIRQTNVVWMLFVACSGILDFTLDSSKQKGKQEVNQELHQSSNKK 223

Query: 214 ASHM-DNKTTAPGLXXXXXXXPINKREVVSESNIMYSSFTEEIWDAIFKLWNSKCEVLIA 272
            + +  N              P N  + V  +    S    +I+  I   WN K  +LI 
Sbjct: 224 GATLRSNLRKRKSDISSDTSDPFNHGQTVPSTEDT-SDLVYDIYTVISTSWNLKWRILIK 282

Query: 273 FIPFAMVLLVFVAFIVWNGGIVLGAKEAHVVSPHFAQFLYFGLVSAAALLPWHFTPTRAS 332
           F PF  V++ F  FI+WNGGIVLGAKEAHVVS HFAQ +YF LVSA    P HF+  +  
Sbjct: 283 FSPFIFVVVAFGIFILWNGGIVLGAKEAHVVSLHFAQIMYFSLVSALFTAPLHFSVNQLR 342

Query: 333 DLFHWCRKNKTYSSFAILVALGLSLVAVHLFSIAHPYLLADNRHYTFYIWRKVIQVHWMM 392
             FH   +N + S    LVAL    V+VH FS+AHPYLLADNRHY FY+WRK+I  HW+M
Sbjct: 343 HQFHQLHRNWSLSLILTLVALVAGFVSVHFFSLAHPYLLADNRHYPFYLWRKIINAHWLM 402

Query: 393 KYILTPVYVYSWFSIVNILGKSQTRXXXXXXXXXXXXXXIPAPLVEFRYYTIPLVILVLH 452
           KYIL PVYVYSWFSI+ +L K++ +              +P PL+EFRYYTIP  + +LH
Sbjct: 403 KYILVPVYVYSWFSILTLLAKTRRQTWILVYFLATCGVLVPTPLIEFRYYTIPFYLFMLH 462

Query: 453 SPVISN--VKLLALGFLYAAVDFFTLAMFLFRPFQWQHEPGTQRFIW 497
           S V S+     L +G ++ +++ FT+AMFLFRPF+W HE G QRFIW
Sbjct: 463 SCVRSSSFATWLLIGTIFVSINVFTMAMFLFRPFKWSHEDGVQRFIW 509



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.140    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,096,255
Number of extensions: 387658
Number of successful extensions: 1042
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1039
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 394
Effective length of database: 8,282,721
Effective search space: 3263392074
Effective search space used: 3263392074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 114 (48.5 bits)