BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0501800 Os04g0501800|Os04g0501800
(196 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G24290.1 | chr2:10338779-10339859 FORWARD LENGTH=174 158 2e-39
AT4G30996.1 | chr4:15101464-15102461 FORWARD LENGTH=173 149 9e-37
AT2G32580.1 | chr2:13827849-13829135 FORWARD LENGTH=184 80 8e-16
AT1G05070.1 | chr1:1457172-1458531 REVERSE LENGTH=185 74 7e-14
AT4G04360.1 | chr4:2133142-2133866 REVERSE LENGTH=177 55 3e-08
>AT2G24290.1 | chr2:10338779-10339859 FORWARD LENGTH=174
Length = 173
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 96/171 (56%), Gaps = 10/171 (5%)
Query: 17 CLVILAVASALGVSGPAFYWRYKKGFXXXXXXXXXXXXXXXXXXXXXXXXXXDCPPPLSL 76
CLVI +V SAL V GPA YW+ KGF D PPPLSL
Sbjct: 11 CLVIFSVVSALLVCGPALYWKLNKGFVGSARSTNSICPPCVC----------DFPPPLSL 60
Query: 77 QSIAPGLVNFSTSGCGKNDPELSKEMEKQFVDLLNEELKLQQIVAEEHSHHMNATLVEAK 136
IAPGL N S +GCG +DPEL +EMEK FVDLL EELKLQ+ VA+EHS HMN TL EAK
Sbjct: 61 LQIAPGLANLSITGCGSDDPELKEEMEKPFVDLLTEELKLQEAVADEHSRHMNVTLAEAK 120
Query: 137 RQATQYQRXXXXXXXXXXXXXXXXXXXXXXXXXXKKLTALWEQRARQLGWQ 187
R A+QYQ+ +K+T LWE+RARQLGW+
Sbjct: 121 RVASQYQKEAEKCNAATEICESARERAQALLLKERKITFLWERRARQLGWE 171
>AT4G30996.1 | chr4:15101464-15102461 FORWARD LENGTH=173
Length = 172
Score = 149 bits (376), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 96/171 (56%), Gaps = 11/171 (6%)
Query: 17 CLVILAVASALGVSGPAFYWRYKKGFXXXXXXXXXXXXXXXXXXXXXXXXXXDCPPPLSL 76
CLVI AV SAL V GPA YW++ KGF PPPLSL
Sbjct: 11 CLVIFAVVSALVVCGPALYWKFNKGFVGSTRANSLCPPCVCDC-----------PPPLSL 59
Query: 77 QSIAPGLVNFSTSGCGKNDPELSKEMEKQFVDLLNEELKLQQIVAEEHSHHMNATLVEAK 136
IAPGL N S + CG +DPEL +EMEKQFVDLL EELKLQ+ VA+EHS HMN TL EAK
Sbjct: 60 LQIAPGLANLSITDCGSDDPELKQEMEKQFVDLLTEELKLQEAVADEHSRHMNVTLAEAK 119
Query: 137 RQATQYQRXXXXXXXXXXXXXXXXXXXXXXXXXXKKLTALWEQRARQLGWQ 187
R A+QYQ+ +K+T+LWE+RARQ GW+
Sbjct: 120 RVASQYQKEAEKCNAATEICESARERAEALLIKERKITSLWEKRARQSGWE 170
>AT2G32580.1 | chr2:13827849-13829135 FORWARD LENGTH=184
Length = 183
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 15/177 (8%)
Query: 18 LVILAVASALGVSGPAFYWRYKKGFXXXXXXXXXXXXXXXXXXXXXXXXXXDCPPPLSLQ 77
L +LA++ + GP YW + DC L L
Sbjct: 12 LALLALSMIGYILGPPLYWHLTEALAVSATSCSACVC--------------DCSS-LPLL 56
Query: 78 SIAPGLVNFSTSGCGKNDPELSKEMEKQFVDLLNEELKLQQIVAEEHSHHMNATLVEAKR 137
+I GL N S + C K DPE++++ EK + +LL EELK ++ + E ++ L+EAK+
Sbjct: 57 TIPTGLSNGSFTDCAKRDPEVNEDTEKNYAELLTEELKQREAASMEKHKRVDTGLLEAKK 116
Query: 138 QATQYQRXXXXXXXXXXXXXXXXXXXXXXXXXXKKLTALWEQRARQLGWQDSRPRVT 194
+ YQ+ KKLT++WEQRARQ G++D + T
Sbjct: 117 ITSSYQKEADKCNSGMETCEEAREKAEKALVEQKKLTSMWEQRARQKGYKDGATKST 173
>AT1G05070.1 | chr1:1457172-1458531 REVERSE LENGTH=185
Length = 184
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 22/183 (12%)
Query: 18 LVILAVASALGVSGPAFYWRYKKGFXXXXXXXXXXXXXXXXXXXXXXXXXXDCPPPLSLQ 77
L +L ++ A + GP YW + CP S
Sbjct: 12 LALLGLSMAGYILGPPLYWHLTEALAAVSASSCP-----------------SCPCECSTY 54
Query: 78 S---IAPGLVNFSTSGCGKNDPELSKEMEKQFVDLLNEELKLQQIVAEEHSHHMNATLVE 134
S I L N S + C K+DPE++++ EK + +LL EELKL++ + E + L+E
Sbjct: 55 SAVTIPKELSNASFADCAKHDPEVNEDTEKNYAELLTEELKLREAESLEKHKRADMGLLE 114
Query: 135 AKRQATQYQRXXXXXXXXXXXXXXXXXXXXXXXXXXKKLTALWEQRARQLGWQD--SRPR 192
AK+ + YQ+ KKLT+ WE+RARQ GW++ ++P
Sbjct: 115 AKKVTSSYQKEADKCNSGMETCEEAREKAELALAEQKKLTSRWEERARQKGWREGSTKPN 174
Query: 193 VTT 195
V +
Sbjct: 175 VKS 177
>AT4G04360.1 | chr4:2133142-2133866 REVERSE LENGTH=177
Length = 176
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 27/176 (15%)
Query: 19 VILAVASALGVSGPAFYWRYKKGFXXXXXXXXXXXXXXXXXXXXXXXXXXDCPPPLS--- 75
V++ + ++GP+ YW + CPP +
Sbjct: 14 VVMGLCIVAYIAGPSLYWHLNETIADSLHSS--------------------CPPCVCDCS 53
Query: 76 ---LQSIAPGLVNFSTSGCGKNDPELSKEMEKQFVDLLNEELKLQQIVAEEHSHHMNATL 132
L SI GL N S C ++ E S+E E F +++ EELKL++ A+E + L
Sbjct: 54 SQPLLSIPDGLSNHSFLDCMRH-EEGSEESESSFTEMVAEELKLREAQAQEDEWRADRLL 112
Query: 133 VEAKRQATQYQRXXXXXXXXXXXXXXXXXXXXXXXXXXKKLTALWEQRARQLGWQD 188
++AK+ A+QYQ+ ++L+ +WE RARQ GW++
Sbjct: 113 LDAKKAASQYQKEADKCSMGMETCELAREKAEAALDEQRRLSYMWELRARQGGWKE 168
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.131 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,685,786
Number of extensions: 68880
Number of successful extensions: 277
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 5
Length of query: 196
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 103
Effective length of database: 8,556,881
Effective search space: 881358743
Effective search space used: 881358743
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)