BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0501500 Os04g0501500|Os04g0501500
(454 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G24240.1 | chr2:10310838-10312163 FORWARD LENGTH=442 628 e-180
AT4G30940.1 | chr4:15055149-15056474 FORWARD LENGTH=442 598 e-171
AT3G09030.1 | chr3:2754841-2756223 FORWARD LENGTH=461 101 9e-22
AT5G41330.1 | chr5:16536452-16537828 REVERSE LENGTH=459 83 3e-16
>AT2G24240.1 | chr2:10310838-10312163 FORWARD LENGTH=442
Length = 441
Score = 628 bits (1620), Expect = e-180, Method: Compositional matrix adjust.
Identities = 297/450 (66%), Positives = 357/450 (79%), Gaps = 15/450 (3%)
Query: 5 RVRFNVGGQVFETTTTTLANAGRESMLGALLDSSWNLAPTAXXXXXXXXXXXXXXVAEYF 64
R++FNVGG++FETT TTLANAGR+S GAL D WNL+P F
Sbjct: 7 RIKFNVGGRLFETTATTLANAGRDSFFGALFDDEWNLSPLEDSI--------------LF 52
Query: 65 IDRNPACFAVLLDLLRTGSLHVPPQLPEKLLYREALYYGLLDHVRAARWGAFDGDRLRLA 124
+DRN CFAVLLDLLRTG L+VP +PE+LL+REA +YGLLDHVR A+WG FDG+RLRL+
Sbjct: 53 VDRNSDCFAVLLDLLRTGDLNVPANIPERLLHREASFYGLLDHVRTAKWGPFDGNRLRLS 112
Query: 125 ASVPGRAPGDGTAIRAAPDGGCCVAHGGAVHVYNWMLDERRPVSLDHSQVNDVAYLDEAT 184
SV G APGDGTAIRA PDGGCCVAHG VHV++WML+E P++LD+ +VNDV ++D
Sbjct: 113 DSVKGIAPGDGTAIRAGPDGGCCVAHGSVVHVFDWMLEEHSPINLDYQRVNDVGWIDSDN 172
Query: 185 LLIAARERLGKCDGGMAAFSAVSGDLRHRFRVAHDRQAKSFTAGALAFDQDSSIFASCKG 244
++++A E+LG+ DGGM FS+ SGDLR++F+V H+ Q KS+TAGAL+F D IFASCKG
Sbjct: 173 IVLSACEKLGRGDGGMGLFSSSSGDLRYKFQVCHENQVKSYTAGALSFSPDYEIFASCKG 232
Query: 245 RLNEYGIGVWDRATGEQADFFYEPPGCALGDADKLQWLDATNALMVATLFPKTDNCFIGL 304
R NEYGIGVWD+ TG+Q DFFYE PG +LGDADKLQWL+ N L+VATLFP+ DNC+I L
Sbjct: 233 RSNEYGIGVWDQITGKQTDFFYESPGWSLGDADKLQWLNGKNCLLVATLFPRKDNCYISL 292
Query: 305 LDFRDKNVAWSWSDAGMAASLDDKRVLHAIAMEDERSVCVINQYDDLGFLDLRSNAGGVR 364
LDFRDKN+ WSWSD G ++D+KRV AIAMED S+CV+N+++DLGF+DLR G VR
Sbjct: 293 LDFRDKNMVWSWSDIGSPMAIDEKRVRDAIAMEDSNSICVVNEFEDLGFIDLRMYGGSVR 352
Query: 365 WSSRSKFMNRKVPSEESCYPKLATHGGQLFSSMNDSISVFSGPECVLTSTLRRSHGGAIC 424
WSSRSK M K+P +E CYPKLA H GQLFSSMNDSISVF GP+ VLTS LRRS+GG+IC
Sbjct: 353 WSSRSKLMKSKMP-DEPCYPKLALHEGQLFSSMNDSISVFCGPDWVLTSRLRRSYGGSIC 411
Query: 425 DFSIGGDRLFALHNEENVFDVWETPPPPII 454
DFSIGGDRLFALH+EENVFDVWETPP PII
Sbjct: 412 DFSIGGDRLFALHSEENVFDVWETPPCPII 441
>AT4G30940.1 | chr4:15055149-15056474 FORWARD LENGTH=442
Length = 441
Score = 598 bits (1541), Expect = e-171, Method: Compositional matrix adjust.
Identities = 287/452 (63%), Positives = 359/452 (79%), Gaps = 19/452 (4%)
Query: 5 RVRFNVGGQVFETTTTTLANAGRESMLGALLDSSWNLAPTAXXXXXXXXXXXXXXVAEYF 64
R++FNVGG++FETT TTLANAGR+S GAL D +WNL+ + F
Sbjct: 7 RIKFNVGGRIFETTATTLANAGRDSFFGALFDENWNLSQPG----------------DLF 50
Query: 65 IDRNPACFAVLLDLLRTGSLHVPPQLPEKLLYREALYYGLLDHVRAARWGAFDGDRLRLA 124
IDRNP CFAVLLDLLRTG L++PP +PE+LL++EA++YGL+DH+R A+WG FDG+RL L+
Sbjct: 51 IDRNPDCFAVLLDLLRTGDLNIPPNIPERLLHKEAMFYGLIDHLRTAKWGPFDGNRLHLS 110
Query: 125 ASVPGRAPGDGTAIRAAPDGGCCVAHGGAVHVYNWMLDERRPVSLDHSQVNDVAYLDEAT 184
SV G APGDGTAIRA PDGGCC+AHG VHV++WML+E ++LD+ +VNDV ++D
Sbjct: 111 RSVTGIAPGDGTAIRAGPDGGCCIAHGSVVHVFDWMLEEHPTINLDYQRVNDVGWIDSGN 170
Query: 185 LLIAARERLGKCDGGMAAFSAVSGDLRHRFRVAHDRQAKSFTAGALAFDQDSSIFASCKG 244
++++A ERLG+ DGGM FS+ SG+LR++F+V+HD Q KS++AGAL+F DS IF SCKG
Sbjct: 171 IVLSACERLGRGDGGMGLFSSSSGELRYKFQVSHDNQVKSYSAGALSFSPDSKIFTSCKG 230
Query: 245 RLNEYGIGVWDRATGEQADFFYEPPGCALGDADKLQWLDATNALMVATLFPKTDNCFIGL 304
R NEYGIGVWD++TG+Q DFFYE PG +LGDADKLQWL N L+VATLFP+ DNC+I L
Sbjct: 231 RSNEYGIGVWDQSTGKQVDFFYESPGWSLGDADKLQWLSGKNCLLVATLFPRKDNCYISL 290
Query: 305 LDFRDKNVAWSWSDAGMAASLDDKRVLHAIAMEDERSVCVINQYDDLGFLDLRSNAGG-- 362
LDFR+KN+ WSWSD G ++KRV AIAME+ S+CV+N+++DLGF+DLR + GG
Sbjct: 291 LDFREKNMVWSWSDIGFLTMAEEKRVRDAIAMEESNSICVVNEFEDLGFIDLRMDGGGSS 350
Query: 363 VRWSSRSKFMNRKVPSEESCYPKLATHGGQLFSSMNDSISVFSGPECVLTSTLRRSHGGA 422
VRWSSRS+ M K+P +E CYPKLA H GQLFSSMNDSISVF G + VLTS L+RS+GG+
Sbjct: 351 VRWSSRSRLMKSKMP-DEPCYPKLALHEGQLFSSMNDSISVFCGSDWVLTSRLKRSYGGS 409
Query: 423 ICDFSIGGDRLFALHNEENVFDVWETPPPPII 454
ICDFSIGGDRLFALH+EENVFDVWET PPPII
Sbjct: 410 ICDFSIGGDRLFALHSEENVFDVWETLPPPII 441
>AT3G09030.1 | chr3:2754841-2756223 FORWARD LENGTH=461
Length = 460
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 129/478 (26%), Positives = 197/478 (41%), Gaps = 64/478 (13%)
Query: 2 GGGRVRFNVGGQVFETTTTTLANAGRESMLGALLDSSWNLAPTAXXXXXXXXXXXXXXVA 61
GG RV+ NVGG++FET +T+ ++ +S+L AL S+
Sbjct: 6 GGKRVKLNVGGEIFETNASTIQSSCPDSLLAALSTST------------------SHGSN 47
Query: 62 EYFIDRNPACFAVLLDLLRTGSLHVPPQ--LPEKLLYREALYYGLLDHVRAARWG----A 115
FIDR+P FAV+L+LLRTG L ++ L EA+YYG+ +R A
Sbjct: 48 PVFIDRDPEIFAVILNLLRTGRLPANSSGVFSKQELLDEAMYYGVESLLRLAMLPPPLLG 107
Query: 116 FDGDRLRLAASVPGRAPGDGTAIRA-APDGGCCVAHGGAVHVYNWMLDERRPVSLDHSQV 174
FD L +++ A G +A+ A A D +AHGG + VY+W L V + +
Sbjct: 108 FDAS---LVSTIVPAADGVPSALTATAGDASLWIAHGGQISVYDWSLSHAGTV---RTHL 161
Query: 175 NDVAYLDEATLLIAARERLGKCDGGMAAFSAVSGDL---RHRFRVAHDRQAKSFTAGALA 231
ND+ + AA +G F +SG + D + A+A
Sbjct: 162 NDITSICRVWGEAAA---IGSGSASGLHFYDLSGGRYIGSTHWTDPEDPRIHKARVAAVA 218
Query: 232 FDQDSSIFASCKGRLNEYGIGVWDRATGEQADFFYEPPGCALGDA--DKLQWLDATNALM 289
D + +FAS E + D++T + A + G + +KL+WL A L+
Sbjct: 219 -DSEGGVFASFDCLHRENSVLQIDKSTLQVAAVIGQQSGNSAKTTVPEKLRWLPAKGLLV 277
Query: 290 VATLFPKTDNC--FIGLLDFRDKNVAWSWSDAGMAAS--LDDKRVLHAIAMEDERSVCVI 345
+ + C +I + D R +N+ W ++ G S D + +ED V
Sbjct: 278 GSAVQRGVFGCSGYIRIWDPRSRNIVWETNEPGSGRSTRFGDALADMDVDVEDSILFKVC 337
Query: 346 NQYDDLGFLDLRSNAGGVRWSSRSKFMNRKVP-----------SEESCYPK--LATHGG- 391
++ DLG D+R G W +M+ + P S CY K LA GG
Sbjct: 338 SKSGDLGMADIR-KLGEDPWV----YMSDENPGAWKAGDGGGYSVVHCYRKQVLAARGGA 392
Query: 392 -QLFSSMNDSISVFSGPECVLTSTLRRSHGGAICDFSIGGDRLFALHNEENVFDVWET 448
+++SS+ + S S G I GGDRLF +VWET
Sbjct: 393 LEVWSSVKEKTSGDPIRRRNFVDKEDDSKRGMISKIEAGGDRLFVSRECMEGVEVWET 450
>AT5G41330.1 | chr5:16536452-16537828 REVERSE LENGTH=459
Length = 458
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 113/487 (23%), Positives = 190/487 (39%), Gaps = 82/487 (16%)
Query: 6 VRFNVGGQVFETTTTTLANAGRESMLGALLDSSWNLAPTAXXXXXXXXXXXXXXVAEYFI 65
V NVGG++F+TT TL+ AG +S+L L + F+
Sbjct: 13 VSINVGGRIFQTTKQTLSLAGTDSLLSQLATET-----------------------TRFV 49
Query: 66 DRNPACFAVLLDLLRTGSLHVPPQ-LPEKLLYREALYYG----LLDHV-RAARWGAFDGD 119
DR+P F+VLL +LRTG+L + + L E+ YYG L+D + ++++ FD
Sbjct: 50 DRDPDLFSVLLYILRTGNLPARSRAFDVRDLIDESRYYGIESFLIDSLSNSSQFEPFDLR 109
Query: 120 RLRLAASVPGRAPGDGTAIRAAPDGGCCVAHGGAVHVYNWMLDERRPVSLDHSQVNDVAY 179
R R+ +P + GG VAHG + ++W L ++ V + S V+ +
Sbjct: 110 RSRILQLNGRDSPSSISP--TVIGGGLHVAHGSKITSFDWSLRQKSTVLTNFSAVDSLLE 167
Query: 180 LDEATLLIAARE--RLGKCDGGMAAFSAVSGDLRHRFRVAHDRQAKSFTAGALAFDQDSS 237
+ L A + L D F + + + R + QA + L +SS
Sbjct: 168 ISPGVLAAGATDFPGLQIIDLDNGGFVRTTLNWENVTRSSSTVQAIGSSHEFLFTSFESS 227
Query: 238 IFASCKGRLNEYGIGVWDRATGEQADFFYEPPGCALGDAD--------KLQWLDATNALM 289
R N I V+D ++ E C + AD KL+W+ + N LM
Sbjct: 228 -------RRNSNSIMVYDLSSLLPVS---EIDHCEIYGADIDSAIPSTKLKWIQSCNLLM 277
Query: 290 V--ATLFPKTDNCFIGLLDFRDKNVAWSWSDAGMAASLDDKRVLHAIAMEDERSVC--VI 345
V + P N I D R +N+ W +A + + + D S V
Sbjct: 278 VSGSHTSPSGVNGHIRFWDVRSRNMVWEIKEA--------QDCFSDVTVSDNLSAVFKVG 329
Query: 346 NQYDDLGFLDLRSNAGGVRWSSRSKFMNRKVPSEESCYPKLATHGGQLF-SSMNDSISVF 404
++ + DLRS W + R + K+ ++G +F SS I ++
Sbjct: 330 VTSGEVFYADLRSLGTKDPWVCLGEEKKRNLNERRGVGSKIESYGNHVFCSSKGSGIELW 389
Query: 405 S----------GPECVLTSTLRRSHGGAICD--------FSIGGDRLFALHNEENVFDVW 446
S + + R++ G + D + GG+R+F ++ VW
Sbjct: 390 SEVITGLVGNASRDVLEERVFRKNSLGKLADSGENKITGLAFGGNRMFVTRKDQQSVQVW 449
Query: 447 ETPPPPI 453
++P I
Sbjct: 450 QSPSRGI 456
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,637,568
Number of extensions: 452137
Number of successful extensions: 773
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 759
Number of HSP's successfully gapped: 4
Length of query: 454
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 352
Effective length of database: 8,310,137
Effective search space: 2925168224
Effective search space used: 2925168224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)