BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0498900 Os04g0498900|J065071K10
         (190 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31400.1  | chr4:15237411-15239266 FORWARD LENGTH=346          142   1e-34

>AT4G31400.1 | chr4:15237411-15239266 FORWARD LENGTH=346
          Length = 345

 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/173 (47%), Positives = 104/173 (60%), Gaps = 9/173 (5%)

Query: 17  FGEGQLLHKLCKVYLFISSQRIVGCLVAEPIKTAHKVIPGSTEENGTDLPVDKIEPVKTN 76
            GE  +LH+ CKVYLFISSQRI GCLVAEPIK A K+I    +E      + K      +
Sbjct: 174 LGEDWILHQHCKVYLFISSQRISGCLVAEPIKEAFKLIASPDDER----QLQKESSSSPS 229

Query: 77  HTLEFGKISFKREVLKRHDHSDKNKEEYRDPGAIICEKEDVPAHCGFRAIWVVPSRRRKR 136
            +++FG I  +REV KR   SD    +  D G I+CE+E  PA CG RAIWV PS RRK 
Sbjct: 230 TSIQFGNIVLQREVSKRCRTSD----DRLDNGVIVCEEEAKPAVCGIRAIWVSPSNRRKG 285

Query: 137 IGSQLMDAARKSFL-EGETLCISQCAFSPPTSSGKALARSYCKTSAFLVYKEQ 188
           I + L+D  R+SF   G  L  SQ AFS P+S G++    Y  T +FL+YK Q
Sbjct: 286 IATWLLDTTRESFCNNGCMLEKSQLAFSQPSSIGRSFGSKYFGTCSFLLYKAQ 338



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,245,194
Number of extensions: 179763
Number of successful extensions: 385
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 97
Effective length of database: 8,556,881
Effective search space: 830017457
Effective search space used: 830017457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)