BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0496600 Os04g0496600|AK065058
         (239 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43795.2  | chr2:18141135-18141931 REVERSE LENGTH=171          105   2e-23
AT3G59800.1  | chr3:22094597-22096174 REVERSE LENGTH=187           82   3e-16

>AT2G43795.2 | chr2:18141135-18141931 REVERSE LENGTH=171
          Length = 170

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 58/64 (90%)

Query: 79  EWHAARLASLNKTHTVTWEEFKKKQKEDELKRGEMEADKDKMMREYRAQLDAERAQKLAL 138
           EWHAARLASL  THT+TWEE+K+KQKE+ELK+ E+EAD DK+MREYRAQLDAERA KL+ 
Sbjct: 9   EWHAARLASLKTTHTLTWEEYKQKQKEEELKKQEVEADTDKLMREYRAQLDAERAMKLSK 68

Query: 139 GRNH 142
           GRN+
Sbjct: 69  GRNY 72



>AT3G59800.1 | chr3:22094597-22096174 REVERSE LENGTH=187
          Length = 186

 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 59/64 (92%)

Query: 79  EWHAARLASLNKTHTVTWEEFKKKQKEDELKRGEMEADKDKMMREYRAQLDAERAQKLAL 138
           EWHAARLASL  THT+TWEE+K+KQKE+ELK+GE+EAD DK+MREYRAQLDAER+ KL+ 
Sbjct: 38  EWHAARLASLKTTHTITWEEYKQKQKEEELKKGELEADTDKLMREYRAQLDAERSLKLSK 97

Query: 139 GRNH 142
           GRN+
Sbjct: 98  GRNY 101



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.309    0.124    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,235,316
Number of extensions: 54614
Number of successful extensions: 374
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 2
Length of query: 239
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 143
Effective length of database: 8,474,633
Effective search space: 1211872519
Effective search space used: 1211872519
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 110 (47.0 bits)