BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0490300 Os04g0490300|J090082P18
         (126 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14230.1  | chr5:4591883-4595775 FORWARD LENGTH=752            103   2e-23

>AT5G14230.1 | chr5:4591883-4595775 FORWARD LENGTH=752
          Length = 751

 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/117 (55%), Positives = 84/117 (71%)

Query: 1   EDVIMDELGRQLVLGGAHVKKHTKCGRGKPHGKSLRMVAAAGVLRWGGSGRRNVVCREAE 60
           E VI +EL R+ V+ G+ V KHTK G+GK HGK LRM+ ++GVL WG S +R VVC+E E
Sbjct: 624 EKVIRNELSRRFVIEGSSVMKHTKGGKGKKHGKGLRMLESSGVLSWGKSRKRTVVCKEVE 683

Query: 61  LGGSSAFQLHRQRRGCDAYEPGLFRVATATGREVHFVCQGGEEEAELWVRGIRAVTR 117
           +G S  F+ +R+ +G  A E G+FRV T   +EVHFVC+GG   AE+WVRGIR VTR
Sbjct: 684 IGMSQRFRKNRKGKGDGAEEEGIFRVVTTENKEVHFVCEGGLVCAEMWVRGIRLVTR 740



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,805,095
Number of extensions: 107544
Number of successful extensions: 179
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 39
Effective length of database: 8,721,377
Effective search space: 340133703
Effective search space used: 340133703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)