BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0483500 Os04g0483500|AK060512
(318 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67730.1 | chr1:25391676-25393365 FORWARD LENGTH=319 341 3e-94
AT1G24470.1 | chr1:8674056-8676277 FORWARD LENGTH=313 254 5e-68
AT5G10050.1 | chr5:3144254-3145643 FORWARD LENGTH=280 64 8e-11
AT5G65205.1 | chr5:26050926-26052017 REVERSE LENGTH=286 59 3e-09
AT3G03330.1 | chr3:783572-786148 REVERSE LENGTH=329 51 1e-06
>AT1G67730.1 | chr1:25391676-25393365 FORWARD LENGTH=319
Length = 318
Score = 341 bits (874), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 157/288 (54%), Positives = 207/288 (71%), Gaps = 2/288 (0%)
Query: 29 LARWLYAAFLRPGKPLRRRYGEWAVVTGATDXXXXXXXXXXXXXXMSLVLVGRSPDKLAA 88
L R Y FLRP K LRR YG WA++TG TD ++L+LV R+PDKL
Sbjct: 32 LLRSFYIYFLRPSKNLRR-YGSWAIITGPTDGIGKAFAFQLAQKGLNLILVARNPDKLKD 90
Query: 89 VSGEIRGKHPRAEVRTFVLDFXXXXXXXXXXXXXDSIRGLDVGVLVNSAGMSYPYARYFH 148
VS IR K+ + ++ T V+DF +SI GLDVG+L+N+AGMSYPYA+YFH
Sbjct: 91 VSDSIRSKYSQTQILTVVMDFSGDIDEGVKRIK-ESIEGLDVGILINNAGMSYPYAKYFH 149
Query: 149 EVDEELMRNLIRLNVEALTRVTHAVLPGMVERKRGAIVNIGSGASSILPSYPLYSVYAAT 208
EVDEEL+ NLI++NVE T+VT AVLP M++RK+GAI+N+GSGA++++PSYP YSVYA
Sbjct: 150 EVDEELINNLIKINVEGTTKVTQAVLPNMLKRKKGAIINMGSGAAALIPSYPFYSVYAGA 209
Query: 209 KAYVDQFSRCLYVEYKNKGIDVQCQVPLYAATKMASIKKASFFAPSPETYARAAVRYIGY 268
K YVDQF++CL+VEYK GIDVQCQVPLY ATKM I++ASF SPE YA+AA+R++GY
Sbjct: 210 KTYVDQFTKCLHVEYKKSGIDVQCQVPLYVATKMTKIRRASFLVASPEGYAKAALRFVGY 269
Query: 269 EPRCTPYWPHAVLWFLISAFPEPIVDRLLLNMSVGIRKRGMAKDARKK 316
E +CTPYWPHA++ ++SA PE + + + + IRK+G+ KD+ KK
Sbjct: 270 EAQCTPYWPHALMGAVVSALPESVFESFNIKRCLQIRKKGLQKDSMKK 317
>AT1G24470.1 | chr1:8674056-8676277 FORWARD LENGTH=313
Length = 312
Score = 254 bits (648), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 127/286 (44%), Positives = 185/286 (64%), Gaps = 10/286 (3%)
Query: 29 LARWLYAAFLRPGKPLRRRYGEWAVVTGATDXXXXXXXXXXXXXXMSLVLVGRSPDKLAA 88
L +W FL K L+R YG WA+VTGAT+ ++L+LV R+ KL +
Sbjct: 33 LLKWFTTRFLLTPKRLKR-YGSWAMVTGATEGIGRAFAHELAKHGLNLILVSRNLSKLES 91
Query: 89 VSGEIRGKHPRAEVRTFVLDFXXXXXXXXXXXXXDSIRGLDVGVLVNSAGMSYPYARYFH 148
VS + + + P +++ DF + I+GL+VG+L+N+ G++YP A +FH
Sbjct: 92 VSDDFQQEFPHIKIKIIPFDFSSEGGYGAIE---EGIKGLEVGILINNVGITYPRAMFFH 148
Query: 149 EVDEELMRNLIRLNVEALTRVTHAVLPGMVERKRGAIVNIGSGASSILPSYPLYSVYAAT 208
EVD+ ++R+N+EA T VT +++ M+ R+RGAIVNI SGA+ ++PS+PLY++YAAT
Sbjct: 149 EVDQLTWTKILRVNLEATTWVTRSLIGPMLHRRRGAIVNISSGAAVVVPSHPLYAIYAAT 208
Query: 209 KAYVDQFSRCLYVEYKNKGIDVQCQVPLYAATKM----ASIKKASFFAPSPETYARAAVR 264
KAYVD SR L+VEYK GIDVQCQVPLY +T+M A+I K S F PSPE YA+AAV
Sbjct: 209 KAYVDALSRSLHVEYKQFGIDVQCQVPLYVSTRMVSEVAAIDKPSLFVPSPEVYAKAAVA 268
Query: 265 YIGYEPRCTPYWPHAVLWFLISAFPEPIVDRLLLNMSVGIRKRGMA 310
IG RC+P+W H++ WFL+ P+ +VD +S+G+R+R ++
Sbjct: 269 QIGIGSRCSPFWAHSLQWFLVGLVPDNLVDT--WRLSIGLRRRSLS 312
>AT5G10050.1 | chr5:3144254-3145643 FORWARD LENGTH=280
Length = 279
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 64/123 (52%), Gaps = 8/123 (6%)
Query: 130 VGVLVNSAGMSY--PYARYFHEVDEELMRNLIRLNVEALTRVTHAVLPGMVERKRGAIVN 187
+ VLVN+AG+ P A E M N NV R+T AV+P MV +K+G IVN
Sbjct: 81 IDVLVNNAGVQCVGPLA----ETPISAMENTFNTNVFGSMRMTQAVVPHMVSKKKGKIVN 136
Query: 188 IGSGASSILPSYPLYSVYAATKAYVDQFSRCLYVEYKNKGIDVQCQVPLYAATKMASIKK 247
+GS +++ P VY ATKA + + L +E + GIDV VP T +A+
Sbjct: 137 VGS--ITVMAPGPWAGVYTATKAAIHALTDTLRLELRPFGIDVINVVPGGIRTNIANSAV 194
Query: 248 ASF 250
A+F
Sbjct: 195 ATF 197
>AT5G65205.1 | chr5:26050926-26052017 REVERSE LENGTH=286
Length = 285
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 129 DVGVLVNSAGMSY--PYARYFHEVDEELMRNLIRLNVEALTRVTHAVLPGMVERKRGAIV 186
+ VLVN+AG+ P A E+ M NV R+T AV+P M +K+G IV
Sbjct: 81 QIDVLVNNAGVQCIGPLA----EIPISAMDYTFNTNVLGSMRMTQAVVPHMASKKKGKIV 136
Query: 187 NIGSGASSILPSYPLYSVYAATKAYVDQFSRCLYVEYKNKGIDVQCQVPLYAATKMASIK 246
NIGS SI+ P VY A+KA + + L +E K GIDV VP + +A+
Sbjct: 137 NIGS--ISIMAPGPWAGVYTASKAALHALTDTLRLELKPFGIDVINIVPGGIQSNIANSG 194
Query: 247 KASF 250
+SF
Sbjct: 195 ISSF 198
>AT3G03330.1 | chr3:783572-786148 REVERSE LENGTH=329
Length = 328
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 82/205 (40%), Gaps = 5/205 (2%)
Query: 54 VTGATDXXXXXXXXXXXXXXMSLVLVGRSPDKLAAVSGEIRGKHPRAEVRTFVLDFXX-- 111
+TGA+ L+L R+ +L V E++GK +V+ LD
Sbjct: 48 ITGASRGIGEILAKQFASLDAKLILSARNKAELDRVKSELKGKFAPEDVKVLPLDLASGE 107
Query: 112 XXXXXXXXXXXDSIRGLDVGVLVNSAGMSYPYARYFHEVDEELMRNLIRLNVEALTRVTH 171
G V LV++A P ++ + EE ++ +NV +T
Sbjct: 108 ESLKHVVEQAVSLFPGAGVDYLVHNAAFERPKSKA-SDASEETLKTTFDVNVFGTISLTK 166
Query: 172 AVLPGMVERKRGAIVNIGSGASSILPSYPLYSVYAATKAYVDQFSRCLYVEYKNKGIDVQ 231
V P M+++ G V I S A + PS P ++Y+A+K + + L E+ KGI V
Sbjct: 167 LVAPHMLKQGGGHFVVISSAAGKV-PS-PGQAIYSASKHALHGYFHSLRSEFCQKGIKVT 224
Query: 232 CQVPLYAATKMASIKKASFFAPSPE 256
P T + S + SPE
Sbjct: 225 VVCPGPIETWNGTGTSTSEDSKSPE 249
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,440,912
Number of extensions: 193175
Number of successful extensions: 425
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 5
Length of query: 318
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 219
Effective length of database: 8,392,385
Effective search space: 1837932315
Effective search space used: 1837932315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)