BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0483000 Os04g0483000|AK121996
         (85 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14360.1  | chr5:4631038-4631641 FORWARD LENGTH=164             91   8e-20
AT5G40630.1  | chr5:16271402-16272429 REVERSE LENGTH=166           86   5e-18
AT5G52060.1  | chr5:21152449-21153741 REVERSE LENGTH=343           48   1e-06
AT5G62100.1  | chr5:24940477-24941775 FORWARD LENGTH=297           47   1e-06

>AT5G14360.1 | chr5:4631038-4631641 FORWARD LENGTH=164
          Length = 163

 Score = 91.3 bits (225), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 42/57 (73%), Positives = 51/57 (89%)

Query: 9   GELKTVVSIVTGLEPREQRLLFRGKEREDSDHLHMVGVRDKDKVLLLEDPALKDMKL 65
           GELK V+S++TGLEP++QRL+F+GKERED ++LHMVGV DKDKVLLLEDP  KD KL
Sbjct: 92  GELKMVLSLLTGLEPKQQRLVFKGKEREDHEYLHMVGVGDKDKVLLLEDPGFKDKKL 148



>AT5G40630.1 | chr5:16271402-16272429 REVERSE LENGTH=166
          Length = 165

 Score = 85.5 bits (210), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 51/64 (79%)

Query: 1   TCDVAFCAGELKTVVSIVTGLEPREQRLLFRGKEREDSDHLHMVGVRDKDKVLLLEDPAL 60
           + D     GELK +++IV+G+E +EQRLLFRGKERED ++LHM+GV D DKV LL+DPA 
Sbjct: 94  SIDANSTFGELKMMIAIVSGIEAKEQRLLFRGKEREDREYLHMIGVGDGDKVFLLQDPAF 153

Query: 61  KDMK 64
           K++K
Sbjct: 154 KELK 157



>AT5G52060.1 | chr5:21152449-21153741 REVERSE LENGTH=343
          Length = 342

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 40/57 (70%)

Query: 9   GELKTVVSIVTGLEPREQRLLFRGKEREDSDHLHMVGVRDKDKVLLLEDPALKDMKL 65
           GELK +++  TG+  ++Q+L+++ KER+    L + GV+DK K++L+EDP  ++ + 
Sbjct: 89  GELKKMLTGPTGIHHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVLIEDPLSQEKRF 145



>AT5G62100.1 | chr5:24940477-24941775 FORWARD LENGTH=297
          Length = 296

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 40/57 (70%)

Query: 9   GELKTVVSIVTGLEPREQRLLFRGKEREDSDHLHMVGVRDKDKVLLLEDPALKDMKL 65
           GELK ++S  TG+  ++ +++++ KER+    L + GV+D+ K++L+EDP  ++ +L
Sbjct: 61  GELKKILSGATGVHHQDMQIIYKDKERDSKMFLDLSGVKDRSKLILIEDPISQEKRL 117



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,644,331
Number of extensions: 57134
Number of successful extensions: 206
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 5
Length of query: 85
Length of database: 11,106,569
Length adjustment: 56
Effective length of query: 29
Effective length of database: 9,571,273
Effective search space: 277566917
Effective search space used: 277566917
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)