BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0477300 Os04g0477300|AK108082
(176 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01600.1 | chr3:229365-231105 FORWARD LENGTH=371 145 8e-36
AT1G25580.1 | chr1:8997064-8999600 REVERSE LENGTH=450 145 8e-36
AT5G14490.1 | chr5:4670779-4672072 REVERSE LENGTH=351 135 9e-33
AT4G29230.1 | chr4:14410338-14414956 FORWARD LENGTH=499 122 8e-29
AT1G28470.1 | chr1:10010259-10011867 FORWARD LENGTH=315 121 2e-28
AT5G56620.1 | chr5:22918521-22921139 REVERSE LENGTH=387 118 2e-27
AT4G28500.1 | chr4:14083014-14084266 FORWARD LENGTH=306 115 9e-27
>AT3G01600.1 | chr3:229365-231105 FORWARD LENGTH=371
Length = 370
Score = 145 bits (367), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 104/166 (62%), Gaps = 5/166 (3%)
Query: 9 CRPWIIAGGKVIATKIRNATQLLSCKLGELVPEAWRECPNCKCHIDNSDVTLQWPEFPDG 68
R WI+ G + IA K++NA+ LS L A +CPNC IDNS+V + WP P G
Sbjct: 2 ARAWIVDG-RGIAAKVKNAS--LSSALQIQDCGAHIKCPNCTYRIDNSNVLIPWPGLPKG 58
Query: 69 VKFDPSDLEVLEHLERKINLGNPGPQGLIDHFIPTLEKVEGICYTHPENLPGIKLDGTSS 128
VKF+P+D +++E LE K +G P LI+ FI + + GI YTHP+NLPG DG S
Sbjct: 59 VKFEPTDEDIIEFLEAKCGIGGSEPHVLIEEFIRPVTEDVGINYTHPQNLPGANKDGVSV 118
Query: 129 HFFHRISNAYGSGQRKRRKISHTGHAASDENIRWHKTGKSNRFTIT 174
FFH+ AYG+GQRKRRKI+ T +DE +RWHKTG++ ++
Sbjct: 119 FFFHKTVQAYGTGQRKRRKITPT--LVNDEPVRWHKTGRTKPVMLS 162
>AT1G25580.1 | chr1:8997064-8999600 REVERSE LENGTH=450
Length = 449
Score = 145 bits (367), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 96/159 (60%), Gaps = 5/159 (3%)
Query: 10 RPWIIAGGKVIATKIRNATQLLSCKLGELVPEAWRECPNCKCHIDNSDVTLQWPEFPDGV 69
R W+I + IATKI +A+ + R CP C+ IDNSDV WP P GV
Sbjct: 4 RSWLIDSNR-IATKIMSASASSDPRQVVWKSNPSRHCPKCQHVIDNSDVVDDWPGLPRGV 62
Query: 70 KFDPSDLEVLEHLERKINLGNPGPQGLIDHFIPTLEKVEGICYTHPENLPGIKLDGTSSH 129
KFDPSD E++ HL K L ID FIPT+ + +GICYTHP+NLPG+K DGT SH
Sbjct: 63 KFDPSDPEIIWHLLAKSGLSGLSSHPFIDEFIPTVNQDDGICYTHPKNLPGVKSDGTVSH 122
Query: 130 FFHRISNAYGSGQRKRRKISHTGHAASDENIRWHKTGKS 168
FFH+ AY +G RKRRKI H ++RWHKTG++
Sbjct: 123 FFHKAIKAYSTGTRKRRKI----HDDDFGDVRWHKTGRT 157
>AT5G14490.1 | chr5:4670779-4672072 REVERSE LENGTH=351
Length = 350
Score = 135 bits (341), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 101/159 (63%), Gaps = 5/159 (3%)
Query: 10 RPWIIAGGKVIATKIRNATQLLSCKLGELVPEAWRECPNCKCHIDNSDVTLQWPEFPDGV 69
R WI+ G I+ ++NA+ LS L A+ C NC IDNS+V WP P GV
Sbjct: 6 RTWIV-DGPWISRNVKNAS--LSSALQIKDCGAYINCFNCSYRIDNSNVLTPWPGLPKGV 62
Query: 70 KFDPSDLEVLEHLERKINLGNPGPQGLIDHFIPTLEKVEGICYTHPENLPGIKLDGTSSH 129
KF+P+D EV+EHLE K + P LI FI ++ + GI YTHP+NLPG+ DGTS
Sbjct: 63 KFEPTDEEVIEHLEAKCGIDGLKPHLLIQDFICSVTQDVGINYTHPQNLPGVSKDGTSVF 122
Query: 130 FFHRISNAYGSGQRKRRKISHTGHAASDENIRWHKTGKS 168
FF++ ++AY +GQRKRR+I+ T + D+ +RWHKTG++
Sbjct: 123 FFNKTAHAYQNGQRKRRRITPT--SLKDDTVRWHKTGQT 159
>AT4G29230.1 | chr4:14410338-14414956 FORWARD LENGTH=499
Length = 498
Score = 122 bits (307), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 88/148 (59%), Gaps = 9/148 (6%)
Query: 27 ATQLLSCKLGELVPEAWRECPNCKCHIDNSDVTLQWPEFPDGVKFDPSDLEVLEHLERKI 86
+ ++ K+ E ++CP+C ++ W P GVKFDP+D E++EHLE K+
Sbjct: 12 GSDIIDAKIEEHQLCGSKKCPSCGHKLEGK--PQDWVGLPAGVKFDPTDQELIEHLEAKV 69
Query: 87 NLGNPGPQGLIDHFIPTLEKVEGICYTHPENLPGIKLDGTSSHFFHRISNAYGSGQRKRR 146
+ LID FIPT+E +GICYTHPE LPG+ DG S HFFHR S AY +G RKRR
Sbjct: 70 LAKDFKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRR 129
Query: 147 KISH------TGHAASDENIRWHKTGKS 168
KI G ++S E RWHKTGK+
Sbjct: 130 KIQTECDNNLQGSSSSGE-TRWHKTGKT 156
>AT1G28470.1 | chr1:10010259-10011867 FORWARD LENGTH=315
Length = 314
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 76/130 (58%), Gaps = 12/130 (9%)
Query: 46 CPNC--KCHIDNSDVT---LQWPEFPDGVKFDPSDLEVLEHLERKINLGNPGPQGLIDHF 100
CP+C K H D P P GVKFDPSD E+L HLE K++ LID F
Sbjct: 53 CPSCGHKLHHHQDDQVGSIKDLPSLPAGVKFDPSDKEILMHLEAKVSSDKRKLHPLIDEF 112
Query: 101 IPTLEKVEGICYTHPENLPGIKLDGTSSHFFHRISNAYGSGQRKRRKIS--HTGHAASDE 158
IPTLE GICYTHPE LPG+ DG HFFHR S AY +G RKRRK+S GH
Sbjct: 113 IPTLEGENGICYTHPEKLPGVSKDGQVRHFFHRPSKAYTTGTRKRRKVSTDEEGHET--- 169
Query: 159 NIRWHKTGKS 168
RWHKTGK+
Sbjct: 170 --RWHKTGKT 177
>AT5G56620.1 | chr5:22918521-22921139 REVERSE LENGTH=387
Length = 386
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 79/138 (57%), Gaps = 9/138 (6%)
Query: 44 RECPNCKCHIDNSDVTLQWPEFPDGVKFDPSDLEVLEHLERKI-----NLGNPGPQGLID 98
+ CP C I + W P GVKFDP+D E++EHLE K+ N LID
Sbjct: 23 KHCPGCGRMI-QAATKPNWVGLPAGVKFDPTDQELIEHLEAKVKGKEENKKWSSSHPLID 81
Query: 99 HFIPTLEKVEGICYTHPENLPGIKLDGTSSHFFHRISNAYGSGQRKRRKISHTGHAAS-- 156
FIPT++ +GICYTHP+ LPG+ DG S HFFH+ S AY +G RKRRKI T H +
Sbjct: 82 EFIPTIDGEDGICYTHPQKLPGVTRDGLSKHFFHKPSRAYTTGTRKRRKIIQTDHDSELT 141
Query: 157 -DENIRWHKTGKSNRFTI 173
RWHKTGK+ I
Sbjct: 142 GSSETRWHKTGKTRPVMI 159
>AT4G28500.1 | chr4:14083014-14084266 FORWARD LENGTH=306
Length = 305
Score = 115 bits (289), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 76/127 (59%), Gaps = 4/127 (3%)
Query: 44 RECPNCKCHIDNSDVT--LQWPEFPDGVKFDPSDLEVLEHLERKINLGNPGPQGLIDHFI 101
+ CP+C + + P P GVKFDP+D EVLEHLE K+ LID FI
Sbjct: 36 KTCPSCGHNFKFHEQAGIHDLPGLPAGVKFDPTDQEVLEHLEGKVRDDAKKLHPLIDEFI 95
Query: 102 PTLEKVEGICYTHPENLPGIKLDGTSSHFFHRISNAYGSGQRKRRKISHTGHAASDENIR 161
T++ GICYTHPE LPG+ DGT HFFHR S AY +G RKRRK+ HT E R
Sbjct: 96 RTIDGENGICYTHPEKLPGVNKDGTVRHFFHRPSKAYTTGTRKRRKV-HTDSDVGGET-R 153
Query: 162 WHKTGKS 168
WHKTGK+
Sbjct: 154 WHKTGKT 160
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,457,539
Number of extensions: 196713
Number of successful extensions: 465
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 7
Length of query: 176
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 84
Effective length of database: 8,584,297
Effective search space: 721080948
Effective search space used: 721080948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)