BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0471400 Os04g0471400|AK100883
         (1239 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56240.2  | chr5:22760088-22763539 REVERSE LENGTH=988          129   1e-29
AT5G56250.2  | chr5:22768918-22771869 REVERSE LENGTH=812          122   9e-28

>AT5G56240.2 | chr5:22760088-22763539 REVERSE LENGTH=988
          Length = 987

 Score =  129 bits (323), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 163/344 (47%), Gaps = 57/344 (16%)

Query: 45  FSIRDYVFASRSKGIKRSWPFHPRSLQLCLKRGVKDLLPPFEPPDLIRSRSLSTTINVEQ 104
           FSIRDY +++R   IK +WPF  +SLQL    GV + LPPF+    + S+        E 
Sbjct: 39  FSIRDYAYSNRKNNIKNNWPFSSKSLQLFSTHGVTNPLPPFQKFSTVSSK-------FET 91

Query: 105 SAASSEANAPVGLVKTRDDGSSIVNASNINFQSCQPVAESLGPSQYTSPEDGKSAVDQGE 164
           +A+ S              G  IV  S+   Q        LG +Q  +    K    Q  
Sbjct: 92  TASPSS-------------GKQIV--SSYVHQGRDLDLAKLGLNQTVAETSSKGVCSQSR 136

Query: 165 NT-NGLDHTDEVMPVDLQVNSCTKAIRQTEVAVPSWRSKNLDSSREPSEKKC-KLVVKVG 222
              NGL              S +K+  + E+ V +  +K  + SR     KC + +VK  
Sbjct: 137 IIENGL----------FPSTSVSKS--EVEILVATTSNKKDNHSR-----KCGRGMVK-- 177

Query: 223 SLTRTEEVASNSSTVSDPMASKTCPVCKVFASTSNTTLNAHMDQCLSVESNTEP----VE 278
             ++ +  A   +T    MASKTCP+CK F+S SNTTLNAH+DQCLSV+S   P     +
Sbjct: 178 --SKEDSCAGLVTTSESIMASKTCPICKTFSSASNTTLNAHIDQCLSVDSALLPPVVFSK 235

Query: 279 XXXXXXXXXXXXXXXMVDIYKTARLFTLEDLDQRNGTNWAIELATPTTNKEVCTENRSPE 338
                          MVDIY +A+  TLEDLD+RNGT W   L+   +N+ V  ++   +
Sbjct: 236 PNKPRSKPPRVKVKTMVDIYASAKQGTLEDLDRRNGTKWVSILS--YSNRVVADKSEVSK 293

Query: 339 VVPFDPRDDEREGDVYVDSNGIKIRILSKSSD---ASLVLRDEH 379
                P      G VY+D+ G K+RILS  S+   ++  LR++H
Sbjct: 294 KRKVSPVG---VGPVYIDAKGQKLRILSGFSEKKSSTTPLREQH 334



>AT5G56250.2 | chr5:22768918-22771869 REVERSE LENGTH=812
          Length = 811

 Score =  122 bits (307), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/230 (38%), Positives = 123/230 (53%), Gaps = 24/230 (10%)

Query: 213 KKCKLVVKVGSLTRT--EEVASNSSTVSDPMASKTCPVCKVFASTSNTTLNAHMDQCLSV 270
           KKC L+VK G+   +  +E  S+  + SD MA +TCP+CK F+S SNTTLNAH+DQCLSV
Sbjct: 143 KKCGLIVKPGACVDSGGKEDHSSLFSASDSMALRTCPICKTFSSASNTTLNAHIDQCLSV 202

Query: 271 ESNTEPVEXXXXXXXXXXXXXXXMVDIYKTARLFTLEDLDQRNGTNWAIELATPTTNKEV 330
           +S  +P+                M DIY +A+  TLEDLD+RNGT WA  + +  +N+ V
Sbjct: 203 DSGQQPIRKPNRPKTKPRLKVKTMTDIYASAKEGTLEDLDKRNGTKWA--MISSYSNRVV 260

Query: 331 CTE-----NRSPEVVPFDPRDDERE---GDVYVDSNGIKIRILSKSSD-ASLVLRDEHNS 381
             +     N+  +      R DE     G VY+D+ G K+RILSK ++ AS   R EH  
Sbjct: 261 SDDKPEVSNKVKKRSVSRARIDEDAAGIGPVYIDAKGQKLRILSKFNEKASDPSRREH-- 318

Query: 382 RKVAKNETGKSMLMSKTCLKSKICKNKRLKFPGKKHSKTNRLNTQVRTHT 431
                    + +   K+  + K  K+ R K  G+KH K  +L  Q R  T
Sbjct: 319 ---------EEVCEKKSSSEGKGGKSFRKKLWGEKHYKHRKLVPQNRKLT 359




 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 35/46 (76%)

Query: 45 FSIRDYVFASRSKGIKRSWPFHPRSLQLCLKRGVKDLLPPFEPPDL 90
          FSIRDY F+ R+K IK+SWPF   SLQLCL  G+ D LPP +PP++
Sbjct: 40 FSIRDYAFSYRTKNIKKSWPFSSTSLQLCLNHGLTDPLPPIQPPEV 85



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.309    0.125    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 26,896,438
Number of extensions: 1180567
Number of successful extensions: 3155
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3152
Number of HSP's successfully gapped: 4
Length of query: 1239
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1129
Effective length of database: 8,090,809
Effective search space: 9134523361
Effective search space used: 9134523361
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 118 (50.1 bits)