BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0469000 Os04g0469000|AK062816
(122 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G05030.1 | chr4:2576790-2577974 REVERSE LENGTH=111 72 9e-14
AT3G07600.1 | chr3:2424300-2424954 REVERSE LENGTH=158 69 4e-13
AT5G48290.1 | chr5:19568980-19569658 FORWARD LENGTH=182 69 6e-13
AT3G20180.1 | chr3:7043385-7043841 REVERSE LENGTH=119 65 9e-12
AT1G55790.1 | chr1:20852685-20856069 REVERSE LENGTH=516 53 4e-08
AT5G52740.1 | chr5:21382530-21383180 FORWARD LENGTH=119 45 8e-06
>AT4G05030.1 | chr4:2576790-2577974 REVERSE LENGTH=111
Length = 110
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 54/71 (76%)
Query: 4 KIVIKVSMPCEKSRSKAMKLVVMASGVSSVEVTGDGKDRLQVVGDGVDAACLVTCLRKKI 63
KI++ VSM C+K RS+A+K+ +GV+ V + G+ KD++ V+G+GVDAACLV LRKK+
Sbjct: 37 KILMSVSMRCDKCRSEALKIGAKTTGVTFVGIEGEEKDKVVVIGEGVDAACLVVRLRKKV 96
Query: 64 GHAELVQVEEV 74
G A+++ V +V
Sbjct: 97 GFADIISVTDV 107
>AT3G07600.1 | chr3:2424300-2424954 REVERSE LENGTH=158
Length = 157
Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%)
Query: 1 MKQKIVIKVSMPCEKSRSKAMKLVVMASGVSSVEVTGDGKDRLQVVGDGVDAACLVTCLR 60
MKQKI+I+++M + +R+KAMK V GV++VE+ GD +++++V G VD L+ LR
Sbjct: 1 MKQKILIRIAMTDDTTRAKAMKTAVQFKGVNAVEIKGDHRNQIEVTGVEVDMIALINTLR 60
Query: 61 KKIGHAELVQVEEV 74
KK+ AELV V +V
Sbjct: 61 KKVAFAELVSVAKV 74
>AT5G48290.1 | chr5:19568980-19569658 FORWARD LENGTH=182
Length = 181
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 52/74 (70%)
Query: 1 MKQKIVIKVSMPCEKSRSKAMKLVVMASGVSSVEVTGDGKDRLQVVGDGVDAACLVTCLR 60
MKQKI+I+V+M +K+R+KAM V GVS+VE+ GD +++++V G VD L+ LR
Sbjct: 1 MKQKILIRVTMTDDKTRAKAMTKAVQFKGVSAVEIKGDHRNQIEVTGVEVDMIPLIQILR 60
Query: 61 KKIGHAELVQVEEV 74
KK+ AELV V +V
Sbjct: 61 KKVAFAELVSVTKV 74
>AT3G20180.1 | chr3:7043385-7043841 REVERSE LENGTH=119
Length = 118
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 47/68 (69%)
Query: 7 IKVSMPCEKSRSKAMKLVVMASGVSSVEVTGDGKDRLQVVGDGVDAACLVTCLRKKIGHA 66
IK+S+ EK R KAM++ V A GV+SV + G+ +D L VVGDGVD+A L+ LRKK H
Sbjct: 3 IKLSVNSEKCRKKAMQVAVAADGVTSVAMEGEFQDELVVVGDGVDSASLIMALRKKACHV 62
Query: 67 ELVQVEEV 74
L +EEV
Sbjct: 63 TLETLEEV 70
>AT1G55790.1 | chr1:20852685-20856069 REVERSE LENGTH=516
Length = 515
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 2 KQKIVIKVSMPCEKSRSKAMKLVVMASGVSSVEVTGDGKDRLQVVGDGVDAACLVTCLRK 61
KQ+IV+K+ M EKS KAMK+ GV SV + G D+L ++G+G+D A L L+K
Sbjct: 376 KQRIVLKMDMSDEKSMKKAMKIASAKPGVRSVSIQGQ-NDQLVLLGEGIDLAELTRELKK 434
Query: 62 KIGHAELVQV 71
K+ ++ V
Sbjct: 435 KVCMTTIITV 444
>AT5G52740.1 | chr5:21382530-21383180 FORWARD LENGTH=119
Length = 118
Score = 45.1 bits (105), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 3 QKIVIKVSMPCEKSRSKAMKLVVMASGVSSVEVTGDGKDRLQVVGDGVDAACLVTCLRKK 62
Q +V+K+ + CEK++ KAM V SGV+SVEV DGK L V G+ +DA +V L KK
Sbjct: 2 QVVVLKLDVHCEKTKQKAMSTVCCLSGVNSVEV-KDGK--LTVTGE-IDAYMIVKKL-KK 56
Query: 63 IGHAELVQV 71
I H E + V
Sbjct: 57 ICHTEFISV 65
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,793,057
Number of extensions: 46527
Number of successful extensions: 166
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 6
Length of query: 122
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 36
Effective length of database: 8,748,793
Effective search space: 314956548
Effective search space used: 314956548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)