BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0467100 Os04g0467100|AK072142
         (663 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G03810.1  | chr2:1162703-1164286 FORWARD LENGTH=440             71   2e-12

>AT2G03810.1 | chr2:1162703-1164286 FORWARD LENGTH=440
          Length = 439

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 598 LTPSGHIPYSGNIXXXXXXXXXXXXXFAFPVLQTEWNSSPVKMAKAXXXXXXXXXGWGYR 657
           +T SG I YSG++             FAFP+LQ+EWNSSPV+MAKA         GW + 
Sbjct: 375 ITYSGPIAYSGSLSVRSDASTTSGRSFAFPILQSEWNSSPVRMAKA--DKRRQKGGWRHT 432

Query: 658 ILCCKF 663
           +LCC+F
Sbjct: 433 LLCCRF 438



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.307    0.126    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,022,540
Number of extensions: 612391
Number of successful extensions: 2140
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2144
Number of HSP's successfully gapped: 2
Length of query: 663
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 558
Effective length of database: 8,227,889
Effective search space: 4591162062
Effective search space used: 4591162062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 115 (48.9 bits)