BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0464500 Os04g0464500|AK069067
(311 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G04210.1 | chr4:2030391-2031670 FORWARD LENGTH=304 288 2e-78
AT4G22150.1 | chr4:11731272-11732800 REVERSE LENGTH=368 282 2e-76
AT4G15410.1 | chr4:8814868-8816596 FORWARD LENGTH=422 277 4e-75
AT3G21660.1 | chr3:7624495-7626654 REVERSE LENGTH=436 114 6e-26
>AT4G04210.1 | chr4:2030391-2031670 FORWARD LENGTH=304
Length = 303
Score = 288 bits (738), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 157/298 (52%), Positives = 193/298 (64%), Gaps = 22/298 (7%)
Query: 24 IRTLADISRXXXXXXXXXXXXXXDSDEPQEYYTGGEKSGMLVQDPTRRNTVDSIFEQARQ 83
IRTL+D++R QEYYTGGEKSGMLVQDP++++ VD IF QARQ
Sbjct: 18 IRTLSDLNRRSGPDSDSDSDGP------QEYYTGGEKSGMLVQDPSKKDDVDEIFNQARQ 71
Query: 84 MGALQD--QPPPFEDQXXXXXXFTGTGRLLSGETXXXXXXXXGNVLHNIQFWNNGFTVDD 141
+GA++ +PPP FTGTGRLLSGE V+HNI FW+NGFT+DD
Sbjct: 72 LGAVEGPLEPPP------SSRSFTGTGRLLSGENVPTGNQQPEPVVHNIVFWSNGFTIDD 125
Query: 142 GPLRDYDDPANADFIESIKKSQCPQELEPADRRTPVHVNVIKRLEDYQAPLRPPSPFQGV 201
GPLR DDP NA F+ESI+KS+CP+ELEPADRR PVHVN++++ E + FQGV
Sbjct: 126 GPLRKLDDPENASFLESIRKSECPKELEPADRRAPVHVNLMRKEEKCPERQKRRVSFQGV 185
Query: 202 GRTLXXXXXXXXXXXXXX-------XXXXXRRSVGIVVDDSLPFTSIQLRLADGTRMVAR 254
GRTL S +V+D+++P TSIQLRLADGTR+VA+
Sbjct: 186 GRTLGGSNEGSGSSSPVAPDSAPIPIQTEPAPSQSLVIDETVPTTSIQLRLADGTRLVAK 245
Query: 255 FNMHHTVGDIRSFIDASRPGATRPYQLQT-GFPPKQLADPAQTVEQAGLANSVIIQKM 311
FN HHTV DIR FID+SRPGA+ YQLQT GFPPK L D QT+E+AGLANSV++QK
Sbjct: 246 FNHHHTVNDIRGFIDSSRPGASLNYQLQTMGFPPKPLTDLTQTIEEAGLANSVVLQKF 303
>AT4G22150.1 | chr4:11731272-11732800 REVERSE LENGTH=368
Length = 367
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/294 (53%), Positives = 189/294 (64%), Gaps = 16/294 (5%)
Query: 24 IRTLADISRXXXXXXXXXXXXXXDSDEPQEYYTGGEKSGMLVQDPTR---RNTVDSIFEQ 80
IRTL+D++R PQEY+TGGEKSGMLVQDPT+ + VD IF Q
Sbjct: 84 IRTLSDLNRRSEPDSDSDSDG------PQEYFTGGEKSGMLVQDPTKEPKHDDVDEIFNQ 137
Query: 81 ARQMGALQDQPPPFEDQXXXXXXFTGTGRLLSGETXXXXXXXXGNVLHNIQFWNNGFTVD 140
ARQ+GA++ P E FTGTGRLLSGE+ V+HNI FW+NGFTVD
Sbjct: 138 ARQLGAVEG---PLE-HPSSSRSFTGTGRLLSGESVPTALQQPEPVIHNIIFWSNGFTVD 193
Query: 141 DGPLRDYDDPANADFIESIKKSQCPQELEPADRRTPVHVNVIKRLEDYQAPLRPPSPFQG 200
DGPLR DDP NA F++SI+KS+CP+ELEP D+R PVHVN+++R E + FQG
Sbjct: 194 DGPLRKLDDPENASFLDSIRKSECPKELEPVDKRAPVHVNLMRRDEKCPEKEKLKVSFQG 253
Query: 201 VGRTLXXXXXXXXXXXXXXXXXXXRRS--VGIVVDDSLPFTSIQLRLADGTRMVARFNMH 258
VGRTL +S +VVD++LP TSIQLRLADGTRMVA+FN H
Sbjct: 254 VGRTLGGASSSTASSQSNLTDVAAVQSPLQSLVVDETLPSTSIQLRLADGTRMVAKFNNH 313
Query: 259 HTVGDIRSFIDASRPGATRPYQLQT-GFPPKQLADPAQTVEQAGLANSVIIQKM 311
HTV DIR FI+ SRPG Y LQ GFPPK L DP+QT+EQAGLA+SV+IQK
Sbjct: 314 HTVNDIRGFIEFSRPGNPNNYTLQVMGFPPKPLTDPSQTIEQAGLASSVVIQKF 367
>AT4G15410.1 | chr4:8814868-8816596 FORWARD LENGTH=422
Length = 421
Score = 277 bits (709), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 148/297 (49%), Positives = 185/297 (62%), Gaps = 19/297 (6%)
Query: 24 IRTLADISRXXXXXXXXXXXXXXDSDEPQEYYTGGEKSGMLVQDPTRRNTVDSIFEQARQ 83
IRT AD++R DSDE EYYTGG+KSGM+VQDP + VD +F+QARQ
Sbjct: 135 IRTFADLNRSPADGEGS------DSDEANEYYTGGQKSGMMVQDPKKVKDVDELFDQARQ 188
Query: 84 MGALQDQPPPFEDQXXXXXXFTGTGRLLSGETXXXXXXXXGN-----VLHNIQFWNNGFT 138
+ P E FTG RLLSGE ++H I FW NGFT
Sbjct: 189 SAVDR----PVEPSRSASTSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWLNGFT 244
Query: 139 VDDGPLRDYDDPANADFIESIKKSQCPQELEPADRRTPVHVNVIKRLEDYQAPLRPPSPF 198
V+DGPLR + DP NA F+ SI +S+CP ELEPAD++ PVHV++++R E++ P +P +PF
Sbjct: 245 VNDGPLRGFSDPENAAFMNSISRSECPSELEPADKKIPVHVDLVRRGENFTEPPKPKNPF 304
Query: 199 QGVGRTLXXXXXXXXXXXXXXXXXXXRR---SVGIVVDDSLPFTSIQLRLADGTRMVARF 255
QGVGRTL S G+VVD + P TSIQLRLADGTR+V+RF
Sbjct: 305 QGVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLVVDPAAPTTSIQLRLADGTRLVSRF 364
Query: 256 NMHHTVGDIRSFIDASRPGATRPYQLQT-GFPPKQLADPAQTVEQAGLANSVIIQKM 311
N HHTV D+R FIDASRPG ++ YQL T GFPPKQL + QT+EQAG+AN+V+IQK
Sbjct: 365 NNHHTVRDVRGFIDASRPGGSKEYQLLTMGFPPKQLTELDQTIEQAGIANAVVIQKF 421
>AT3G21660.1 | chr3:7624495-7626654 REVERSE LENGTH=436
Length = 435
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 98/216 (45%), Gaps = 34/216 (15%)
Query: 107 TGRLLSGETXXXXXXXXGN-------VLHNIQFWNNGFTVDDGPLRDYDDPANADFIESI 159
+ ++LSGET V + + W NGFTVDD P + DDP NA F+E +
Sbjct: 243 SSKVLSGETDSAELQEQQQEDQPYEVVTYTVTIWRNGFTVDDDPFKSLDDPENAAFLEYM 302
Query: 160 ---KKSQCPQELEPADRRTPVHVNVIKRLEDYQAPLRPPSPFQGVGRTLXXXXXXXXXXX 216
K P + H + PP
Sbjct: 303 PEDNKFGVPTTTRSTSCSSQTHQELQTLAGSESTSTEPP--------------------- 341
Query: 217 XXXXXXXXRRSVGIVVDDSLPFTSIQLRLADGTRMVARFNMHHTVGDIRSFIDASRPGAT 276
+VVD + P TSIQL LAD TR+V +FN HHT+ DIR FID SRP +
Sbjct: 342 --LTTTQPPSMSSLVVDPAAPTTSIQLILADSTRIVTQFNTHHTIRDIRCFIDTSRPDGS 399
Query: 277 RPYQLQT-GFPPKQLADPAQTVEQAGLANSVIIQKM 311
+ YQL G PP L+D QT+E+AG+ANSV++QK
Sbjct: 400 KDYQLLIMGSPPTPLSDFDQTIEKAGIANSVLVQKF 435
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 128 HNIQFWNNGFTVDDGPLRDYDDPANADFIESIKKSQCPQELEPADRRTPVHVNVIKRLED 187
H + W+NGFTVDD L+ DDP NA F+E I + P+EL + V V +I R E+
Sbjct: 153 HTVTSWSNGFTVDDSSLKTLDDPENATFLEIISSMESPREL----GQVRVQVKIISREEE 208
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,521,183
Number of extensions: 205137
Number of successful extensions: 364
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 6
Length of query: 311
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 213
Effective length of database: 8,419,801
Effective search space: 1793417613
Effective search space used: 1793417613
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)