BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0464100 Os04g0464100|AK120542
(118 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G05030.1 | chr4:2576790-2577974 REVERSE LENGTH=111 66 5e-12
AT3G07600.1 | chr3:2424300-2424954 REVERSE LENGTH=158 62 7e-11
AT5G48290.1 | chr5:19568980-19569658 FORWARD LENGTH=182 61 1e-10
AT3G20180.1 | chr3:7043385-7043841 REVERSE LENGTH=119 51 1e-07
>AT4G05030.1 | chr4:2576790-2577974 REVERSE LENGTH=111
Length = 110
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 49/65 (75%)
Query: 4 KIVIKVSMPCEKSRSKAMALVARASGVNSMEVTGDGKDRLQVVGDGVDPVCLVACLRRKI 63
KI++ VSM C+K RS+A+ + A+ +GV + + G+ KD++ V+G+GVD CLV LR+K+
Sbjct: 37 KILMSVSMRCDKCRSEALKIGAKTTGVTFVGIEGEEKDKVVVIGEGVDAACLVVRLRKKV 96
Query: 64 GYAEI 68
G+A+I
Sbjct: 97 GFADI 101
>AT3G07600.1 | chr3:2424300-2424954 REVERSE LENGTH=158
Length = 157
Score = 61.6 bits (148), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 49/68 (72%)
Query: 1 MQQKIVIKVSMPCEKSRSKAMALVARASGVNSMEVTGDGKDRLQVVGDGVDPVCLVACLR 60
M+QKI+I+++M + +R+KAM + GVN++E+ GD +++++V G VD + L+ LR
Sbjct: 1 MKQKILIRIAMTDDTTRAKAMKTAVQFKGVNAVEIKGDHRNQIEVTGVEVDMIALINTLR 60
Query: 61 RKIGYAEI 68
+K+ +AE+
Sbjct: 61 KKVAFAEL 68
>AT5G48290.1 | chr5:19568980-19569658 FORWARD LENGTH=182
Length = 181
Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 50/68 (73%)
Query: 1 MQQKIVIKVSMPCEKSRSKAMALVARASGVNSMEVTGDGKDRLQVVGDGVDPVCLVACLR 60
M+QKI+I+V+M +K+R+KAM + GV+++E+ GD +++++V G VD + L+ LR
Sbjct: 1 MKQKILIRVTMTDDKTRAKAMTKAVQFKGVSAVEIKGDHRNQIEVTGVEVDMIPLIQILR 60
Query: 61 RKIGYAEI 68
+K+ +AE+
Sbjct: 61 KKVAFAEL 68
>AT3G20180.1 | chr3:7043385-7043841 REVERSE LENGTH=119
Length = 118
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 7 IKVSMPCEKSRSKAMALVARASGVNSMEVTGDGKDRLQVVGDGVDPVCLVACLRRK 62
IK+S+ EK R KAM + A GV S+ + G+ +D L VVGDGVD L+ LR+K
Sbjct: 3 IKLSVNSEKCRKKAMQVAVAADGVTSVAMEGEFQDELVVVGDGVDSASLIMALRKK 58
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,634,292
Number of extensions: 40020
Number of successful extensions: 124
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 4
Length of query: 118
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 33
Effective length of database: 8,776,209
Effective search space: 289614897
Effective search space used: 289614897
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)