BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0457700 Os04g0457700|J075145N15
         (150 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G34245.1  | chr1:12472990-12473631 FORWARD LENGTH=121           79   6e-16
AT1G71866.1  | chr1:27030682-27031200 REVERSE LENGTH=173           75   2e-14
AT2G20875.1  | chr2:8983179-8983579 REVERSE LENGTH=105             72   9e-14

>AT1G34245.1 | chr1:12472990-12473631 FORWARD LENGTH=121
          Length = 120

 Score = 79.3 bits (194), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 3/84 (3%)

Query: 68  TGGQTATFQVQQGAQPEEETTTEMGNAAEAA--TGSRLPDCTHACGPCSPCRRVMVSLRC 125
            GG+     ++Q     ++  ++ G        TGS LPDC++ACG CSPC+RVM+S  C
Sbjct: 36  NGGEKKNADIEQAQTHHKKEISKNGGVEMEMYPTGSSLPDCSYACGACSPCKRVMISFEC 95

Query: 126 AEAAESCPVAYRCMCRGRFFRVPT 149
           +  AESC V YRC CRGR++ VP+
Sbjct: 96  S-VAESCSVIYRCTCRGRYYHVPS 118



>AT1G71866.1 | chr1:27030682-27031200 REVERSE LENGTH=173
          Length = 172

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 46/57 (80%), Gaps = 1/57 (1%)

Query: 94  AAEAATGSRLPDCTHACGPCSPCRRVMVSLRCAEAAESCPVAYRCMCRGRFFRVPTL 150
             + A+GS +PDC++ACGPC PC+ V++S  C+ A+E+CP+ Y+C+C+G+++ VP+L
Sbjct: 116 VVDKASGSSIPDCSNACGPCKPCKLVVISSTCS-ASEACPLVYKCLCKGKYYHVPSL 171



>AT2G20875.1 | chr2:8983179-8983579 REVERSE LENGTH=105
          Length = 104

 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 40/51 (78%), Gaps = 2/51 (3%)

Query: 100 GSRLPDCTHACGPCSPCRRVMVSLRCA--EAAESCPVAYRCMCRGRFFRVP 148
           GSRLPDC+HACG CSPCR VMVS  CA  E AE+CP+AY+CMC  + + VP
Sbjct: 54  GSRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPVP 104



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.135    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,882,813
Number of extensions: 89314
Number of successful extensions: 276
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 3
Length of query: 150
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 60
Effective length of database: 8,639,129
Effective search space: 518347740
Effective search space used: 518347740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 107 (45.8 bits)