BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0455900 Os04g0455900|AK121783
(253 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G36050.1 | chr1:13450467-13453683 FORWARD LENGTH=490 431 e-121
AT1G22200.1 | chr1:7837857-7840602 REVERSE LENGTH=387 403 e-113
AT3G22290.1 | chr3:7882082-7885260 FORWARD LENGTH=355 129 2e-30
AT3G20560.1 | chr3:7182182-7186390 FORWARD LENGTH=484 79 2e-15
AT1G50950.1 | chr1:18880465-18884043 FORWARD LENGTH=485 79 3e-15
AT4G27080.2 | chr4:13589156-13593335 FORWARD LENGTH=533 65 3e-11
>AT1G36050.1 | chr1:13450467-13453683 FORWARD LENGTH=490
Length = 489
Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust.
Identities = 197/246 (80%), Positives = 219/246 (89%)
Query: 1 MEGLLSKLRSLDAYPKVNEDFYSRTLSGGIITLASSVVMLLLFVSELRLYLHAVTETTLR 60
M G+L+KLR+LDAYPK+NEDFYSRTLSGG+ITL SSVVM LLF SELRLYLH VTET L
Sbjct: 1 MAGILNKLRNLDAYPKINEDFYSRTLSGGVITLLSSVVMFLLFFSELRLYLHTVTETKLI 60
Query: 61 VDTSRGETLRINFDVTFPALQCSIISLDAMDISGQEHLDVKHDIFKQRIDVHGNVIATKQ 120
VDTSRGETLRINFD+TFPAL CSI+S+DAMDISG+ HLDVKHDI K+R+D +GN I +Q
Sbjct: 61 VDTSRGETLRINFDITFPALACSILSVDAMDISGELHLDVKHDIIKRRLDSNGNTIEARQ 120
Query: 121 DAVGGMKVEQPLQRHGGRLEHNETYCGSCYGAEESDEQCCNSCEDVREAYRKKGWGVSNP 180
D +G K+E PLQ+HGGRL HNETYCGSCYGAE + CCNSCEDVREAYRKKGWGV+NP
Sbjct: 121 DGIGATKIENPLQKHGGRLGHNETYCGSCYGAEAEEHDCCNSCEDVREAYRKKGWGVTNP 180
Query: 181 DLIDQCKREGFLQSIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQKANVHVHDLLPFQ 240
DLIDQCKREGFLQ +KDEEGEGCNIYGFLEVNKVAGNFHFAPGKSF ++ VHVHDLL FQ
Sbjct: 181 DLIDQCKREGFLQRVKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFHQSGVHVHDLLAFQ 240
Query: 241 KDSFNV 246
KDSFN+
Sbjct: 241 KDSFNI 246
>AT1G22200.1 | chr1:7837857-7840602 REVERSE LENGTH=387
Length = 386
Score = 403 bits (1036), Expect = e-113, Method: Compositional matrix adjust.
Identities = 180/246 (73%), Positives = 218/246 (88%)
Query: 1 MEGLLSKLRSLDAYPKVNEDFYSRTLSGGIITLASSVVMLLLFVSELRLYLHAVTETTLR 60
M G++++LR+LDAYPK+NEDFY RTLSGG+ITLASS+VML+LF SEL+LY+H VTET LR
Sbjct: 1 MVGVMNRLRNLDAYPKINEDFYRRTLSGGVITLASSIVMLILFFSELQLYIHPVTETQLR 60
Query: 61 VDTSRGETLRINFDVTFPALQCSIISLDAMDISGQEHLDVKHDIFKQRIDVHGNVIATKQ 120
VDTSRGE LRINFDVTFPALQCSIISLD+MDISG+ HLDV+HDI K+R+D GNVI KQ
Sbjct: 61 VDTSRGEKLRINFDVTFPALQCSIISLDSMDISGERHLDVRHDIIKRRLDSSGNVIEAKQ 120
Query: 121 DAVGGMKVEQPLQRHGGRLEHNETYCGSCYGAEESDEQCCNSCEDVREAYRKKGWGVSNP 180
D +G K+E+PLQ+HGGRLEHNETYCGSC+GAE SD+ CCNSCE+VREAYRKKGW +S+P
Sbjct: 121 DGIGHTKIEKPLQKHGGRLEHNETYCGSCFGAEASDDACCNSCEEVREAYRKKGWALSDP 180
Query: 181 DLIDQCKREGFLQSIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQKANVHVHDLLPFQ 240
+ IDQCKREGF+Q +KDEEGEGCN++GFLEVNKVAGNFHF PG+SF ++ HD+L FQ
Sbjct: 181 ESIDQCKREGFVQKVKDEEGEGCNVHGFLEVNKVAGNFHFIPGQSFHQSGFQFHDMLLFQ 240
Query: 241 KDSFNV 246
+ ++N+
Sbjct: 241 QGNYNI 246
>AT3G22290.1 | chr3:7882082-7885260 FORWARD LENGTH=355
Length = 354
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 136/255 (53%), Gaps = 36/255 (14%)
Query: 3 GLLSKLRSLDAYPKVNEDFYSRTLSGGIITLASSVVMLLLFVSELRLYLHAVTETTLRVD 62
G+ LRS+DA+P+ + +T SG ++++ ++M LF+ EL YL+ +T + VD
Sbjct: 2 GVKQALRSIDAFPRAEDHLLQKTQSGAVVSIVGLLIMATLFLHELSYYLNTLTVHQMSVD 61
Query: 63 TSRGETLRINFDVTFPALQCSIISLDAMDISGQEHLDVKHDIFKQRIDVHGNVIATK--Q 120
RGETL I+ ++TFP+L C ++S+DA+D+SG+ +D+ +I+K R++ HG++I T+
Sbjct: 62 LKRGETLPIHVNMTFPSLPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSHGHIIGTEYIS 121
Query: 121 DAV-GGMKVEQPLQRHGGRLEH-NETYCGSCYGAEESDEQCCNSCEDVREAYRKKGWGVS 178
D V G + +H G+ EH NET EA G+ +
Sbjct: 122 DLVEKGHEHGHSPHKHDGKEEHKNETET---------------------EALNILGFDQA 160
Query: 179 NPDLIDQCKREGFLQSIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQKANVHVHDLLP 238
+I + K Q++ D GEGC +YG L+V +VAGNFH S N++V ++
Sbjct: 161 AETMIKKVK-----QALAD--GEGCRVYGVLDVQRVAGNFHI----SVHGLNIYVAQMIF 209
Query: 239 FQKDSFNVIILEHDF 253
+ NV + HD
Sbjct: 210 GGSKNVNVSHMIHDL 224
>AT3G20560.1 | chr3:7182182-7186390 FORWARD LENGTH=484
Length = 483
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 6 SKLRSLDAYPKVNEDFYSRTLSGGIITLASSVVMLLLFVSELRLYLHAVTETTLRVD-TS 64
+KL+S+D Y K+ D +LSG +++ +++ M+ LF EL YL T T + VD +S
Sbjct: 5 TKLKSVDFYRKIPRDLTEASLSGAGLSIVAALFMMFLFGMELSSYLEVNTTTAVIVDKSS 64
Query: 65 RGETLRINFDVTFPALQCSIISLDAMDISGQEHLDVKHDIFKQRIDVH 112
G+ LRI+F+++FPAL C S+D D+ G L++ + K ID H
Sbjct: 65 DGDFLRIDFNISFPALSCEFASVDVSDVLGTNRLNITKTVRKFPIDPH 112
>AT1G50950.1 | chr1:18880465-18884043 FORWARD LENGTH=485
Length = 484
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 6 SKLRSLDAYPKVNEDFYSRTLSGGIITLASSVVMLLLFVSELRLYLHAVTETTLRVD-TS 64
SK++S+D Y K+ D +LSG +++ +++ ML LF EL YL T T++ VD +S
Sbjct: 5 SKIKSVDFYRKIPRDLTEASLSGAGLSIVAALAMLFLFGMELSSYLAINTSTSVIVDKSS 64
Query: 65 RGETLRINFDVTFPALQCSIISLDAMDISGQEHLDVKHDIFKQRIDVH 112
G+ L I+F+++FPAL C S+D D+ G L++ I K ID H
Sbjct: 65 DGDFLNIDFNISFPALSCEFASVDVSDVFGTHRLNISKTIRKVPIDPH 112
>AT4G27080.2 | chr4:13589156-13593335 FORWARD LENGTH=533
Length = 532
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 13 AYPKVNEDFYSRTLSGGIITLASSVVMLLLFVSELRLYLHAVTETTLRVDTSR-GETLRI 71
A K+ D +LSG +++ +++ M+ LF EL YL T T++ VD S G+ LR+
Sbjct: 64 ASKKIPRDLTEASLSGAGLSIIAALSMIFLFGMELNNYLAVSTSTSVIVDRSADGDFLRL 123
Query: 72 NFDVTFPALQCSIISLDAMDISGQEHLDVKHDIFKQRID 110
+F+++FP+L C S+D D+ G L+V I K ID
Sbjct: 124 DFNISFPSLSCEFASVDVSDVLGTNRLNVTKTIRKFSID 162
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,631,500
Number of extensions: 241837
Number of successful extensions: 633
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 630
Number of HSP's successfully gapped: 6
Length of query: 253
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 157
Effective length of database: 8,474,633
Effective search space: 1330517381
Effective search space used: 1330517381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)