BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0451100 Os04g0451100|AK106764
         (424 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G10320.1  | chr5:3244180-3246603 REVERSE LENGTH=404            371   e-103

>AT5G10320.1 | chr5:3244180-3246603 REVERSE LENGTH=404
          Length = 403

 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/379 (53%), Positives = 261/379 (68%), Gaps = 22/379 (5%)

Query: 39  RFLAHFLLFLVQPFDSLSMEKKALLVSDLLRKVNVDTLEEVCHLGSIEC---TSGEGRII 95
           RFL++ +LFLVQP   L ++ K  L+S+ L K++   LEE+    S+E     +     I
Sbjct: 35  RFLSNLVLFLVQPCGELDLDSKLGLLSEFLPKISGPFLEEISR--SLELDDEATTPLNTI 92

Query: 96  PASTSDQDI--SLGDPLQPNKKLKLHAEKLTVQEAPMVGFHAMRRANSTIEDFVRTVRSY 153
            A   +  +  S+ D + P    K H E +      MVG  AM+RANST+EDF R   SY
Sbjct: 93  SAECQNSCVKRSVMDNVDPYMSQK-HQEVVA-----MVGLDAMKRANSTLEDFSR---SY 143

Query: 154 FMFHGLDVNKAQSIFKFLPVLCFTESYIYQLDDLNEYNLQMVPGNDASLTVLERENRTSN 213
           FMFH LD+N+ QSIF++LPVL FTESYIYQ+D LNE   ++V  +     V+   +  + 
Sbjct: 144 FMFHRLDINEPQSIFRYLPVLSFTESYIYQMDALNE---KIVSESACGSQVIYSSHGWNA 200

Query: 214 EASL---TGMLNVLDDLLQRQGLMTDQLRNELKSGIQYWSLERKLCQALSRNDKISIEDV 270
           E+ +   T  L  L DLL+R+ L+T++++ E  SG +YW+LERKLC ALS  +KI +EDV
Sbjct: 201 ESRVLFETNPLKPLGDLLEREALLTNRVQQEFNSGEEYWALERKLCHALSNKNKICLEDV 260

Query: 271 MEAIHLKSFDYRVLNLLMYRLTGQQVNEVHMEFLSISEFLVEISDDLYDYEDDVMNNTFN 330
           M AIHLKSFDYRVLNLL+Y+L G++VNE+HM+FLSISEFLVE++DDL+DYEDDV+ N FN
Sbjct: 261 MRAIHLKSFDYRVLNLLLYKLRGEEVNELHMDFLSISEFLVEVADDLFDYEDDVLENNFN 320

Query: 331 ILRMFAAIYGPSEAPKMLAKCIGEAEEKYERFSKKLDPTLSGSYWRRCEEATKEGGKMSG 390
           +LRMF  I+G S AP  LAK I EAEEKYE   K LDP LS +Y RRCEEATKEGGK+SG
Sbjct: 321 VLRMFVGIFGSSNAPTELAKRISEAEEKYEEIMKSLDPHLSSNYQRRCEEATKEGGKISG 380

Query: 391 HAYGTWNIPPLIRDEEFFR 409
           H+ GTWNIP +I DEE +R
Sbjct: 381 HSLGTWNIPAVISDEEAYR 399



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,353,436
Number of extensions: 346871
Number of successful extensions: 880
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 877
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 323
Effective length of database: 8,337,553
Effective search space: 2693029619
Effective search space used: 2693029619
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)