BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0450600 Os04g0450600|J075014K11
         (189 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G14095.1  | chr2:5932506-5933752 REVERSE LENGTH=235             62   2e-10

>AT2G14095.1 | chr2:5932506-5933752 REVERSE LENGTH=235
          Length = 234

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 71/122 (58%), Gaps = 12/122 (9%)

Query: 74  SMPSWAKWVVGAIIVAIPIY------RKIRALEDTVE---KTAEVAIEVVDTVAEATEKV 124
           + PSW +WV+G+ I  +  +      +K++ +E   E   +  E   E+V+ VA AT+++
Sbjct: 89  NFPSWGRWVIGSAISLVLSFWNNERLQKLKRIEGEAELVVEGVEAVAEMVEKVATATDEM 148

Query: 125 AGELADAFPGNENLKEVASKIKTVADVIEDDAEKAEALIQKVDEIKKELD---AIVDPII 181
           A E+A+  P    LK+VA  ++ +++V   +A   +  + KV+++ +++D   A++ P+I
Sbjct: 149 AEEMAEKLPEKNKLKQVALVLEHISEVAAHEAHLTQDFLHKVEKVTQDIDDLEAMIKPLI 208

Query: 182 DK 183
           DK
Sbjct: 209 DK 210



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.130    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,360,143
Number of extensions: 111878
Number of successful extensions: 642
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 638
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 96
Effective length of database: 8,556,881
Effective search space: 821460576
Effective search space used: 821460576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)