BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0449000 Os04g0449000|AK106468
         (56 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14140.1  | chr1:4838131-4839602 REVERSE LENGTH=306             79   3e-16
AT4G24570.1  | chr4:12686546-12687487 FORWARD LENGTH=314           47   2e-06

>AT1G14140.1 | chr1:4838131-4839602 REVERSE LENGTH=306
          Length = 305

 Score = 79.3 bits (194), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/38 (86%), Positives = 34/38 (89%)

Query: 1   VKTVKHEGLTALWKGFLPTWARLGPWQFVFWVSYEKLR 38
           VKTVK EG+ ALWKGF PTWARLGPWQFVFWVSYEK R
Sbjct: 260 VKTVKFEGIRALWKGFFPTWARLGPWQFVFWVSYEKFR 297



>AT4G24570.1 | chr4:12686546-12687487 FORWARD LENGTH=314
          Length = 313

 Score = 46.6 bits (109), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query: 1   VKTVKHEGLTALWKGFLPTWARLGPWQFVFWVSYEKLRQ 39
           VKTVK EG  AL+KGF+PT  R GP+  V +V+ E++R+
Sbjct: 270 VKTVKAEGAMALYKGFVPTVCRQGPFTVVLFVTLEQVRK 308



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.130    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,244,365
Number of extensions: 33120
Number of successful extensions: 130
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 2
Length of query: 56
Length of database: 11,106,569
Length adjustment: 29
Effective length of query: 27
Effective length of database: 10,311,505
Effective search space: 278410635
Effective search space used: 278410635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)