BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0442800 Os04g0442800|AK121065
(140 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G23670.1 | chr3:8519290-8525055 FORWARD LENGTH=1314 88 1e-18
AT4G14150.1 | chr4:8158645-8165008 REVERSE LENGTH=1293 86 6e-18
AT3G19050.1 | chr3:6578047-6590106 FORWARD LENGTH=2772 64 3e-11
AT3G17360.1 | chr3:5936108-5946205 FORWARD LENGTH=2067 60 3e-10
AT3G20150.1 | chr3:7031412-7036499 FORWARD LENGTH=1115 59 7e-10
AT3G44050.1 | chr3:15818738-15824792 FORWARD LENGTH=1264 56 6e-09
>AT3G23670.1 | chr3:8519290-8525055 FORWARD LENGTH=1314
Length = 1313
Score = 88.2 bits (217), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/68 (66%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
Query: 52 LQIGEDVRTACVYVESLTKELVFTTKDVTQLLVKGLSNRRTGATSANADSSRSHCVFTCV 111
L I EDV++ VYVE+LT+E V KD+++LLVKGL+NRRTGATS NA+SSRSHCVFTCV
Sbjct: 250 LMIREDVKSG-VYVENLTEEYVKNLKDLSKLLVKGLANRRTGATSVNAESSRSHCVFTCV 308
Query: 112 SKSESKVV 119
+S K V
Sbjct: 309 VESHCKSV 316
>AT4G14150.1 | chr4:8158645-8165008 REVERSE LENGTH=1293
Length = 1292
Score = 85.9 bits (211), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/68 (64%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Query: 52 LQIGEDVRTACVYVESLTKELVFTTKDVTQLLVKGLSNRRTGATSANADSSRSHCVFTCV 111
L I EDV++ VYVE+LT+E V DV+QLL+KGL NRRTGATS N +SSRSHCVFTCV
Sbjct: 245 LMIREDVKSG-VYVENLTEEYVKNLTDVSQLLIKGLGNRRTGATSVNTESSRSHCVFTCV 303
Query: 112 SKSESKVV 119
+S K V
Sbjct: 304 VESRCKNV 311
>AT3G19050.1 | chr3:6578047-6590106 FORWARD LENGTH=2772
Length = 2771
Score = 63.9 bits (154), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 52 LQIGEDVRTACVYVESLTKELVFTTKDVTQLLVKGLSNRRTGATSANADSSRSHCVFTCV 111
LQ+ ED+++ VYVE+LT+ V + +D+ L+ +G NRR GAT+ N +SSRSH VFTCV
Sbjct: 352 LQLREDIKSG-VYVENLTECEVQSVQDILGLITQGSLNRRVGATNMNRESSRSHSVFTCV 410
Query: 112 SKS 114
+S
Sbjct: 411 IES 413
>AT3G17360.1 | chr3:5936108-5946205 FORWARD LENGTH=2067
Length = 2066
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 52 LQIGEDVRTACVYVESLTKELVFTTKDVTQLLVKGLSNRRTGATSANADSSRSHCVFTCV 111
LQ+ ED+ VYVE+L + V T DV +LL++G +NR+ AT N++SSRSH VFTC
Sbjct: 327 LQLREDLGKG-VYVENLVEHNVRTVSDVLKLLLQGATNRKIAATRMNSESSRSHSVFTCT 385
Query: 112 SKS 114
+S
Sbjct: 386 IES 388
>AT3G20150.1 | chr3:7031412-7036499 FORWARD LENGTH=1115
Length = 1114
Score = 59.3 bits (142), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 52 LQIGEDVRTACVYVESLTKELVFTTKDVTQLLVKGLSNRRTGATSANADSSRSHCVFTCV 111
L+I +D + +YVE+LT+E V + +DV Q+L+KGLS+R+ GATS + SSRSH + + +
Sbjct: 255 LKIKDDAKNG-IYVENLTEEYVDSYEDVAQILMKGLSSRKVGATSTSFQSSRSHVILSFI 313
Query: 112 SKSESK 117
+S +K
Sbjct: 314 VESWNK 319
>AT3G44050.1 | chr3:15818738-15824792 FORWARD LENGTH=1264
Length = 1263
Score = 55.8 bits (133), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 52 LQIGEDVRTACVYVESLTKELVFTTKDVTQLLVKGLSNRRTGATSANADSSRSHCVFTCV 111
LQ+ ED + ++VE+L + V + +DV Q L++G +NR+ AT+ N SSRSH VFTC+
Sbjct: 252 LQLREDHKKG-IHVENLKEIEVSSARDVIQQLMQGAANRKVAATNMNRASSRSHSVFTCI 310
Query: 112 SKSE 115
+S+
Sbjct: 311 IESK 314
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,304,337
Number of extensions: 66628
Number of successful extensions: 283
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 6
Length of query: 140
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 52
Effective length of database: 8,693,961
Effective search space: 452085972
Effective search space used: 452085972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 106 (45.4 bits)